ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATAGGATGCCTACTACAGGTGATTGTCTTCCCTGTCTGCTCGCC
CACGTTCCTCCTTTCCCAATCCAGATCAGATTAACAGTGCCCTTCAAACA
CACTGCCATTTGCAGTTTTCAAGGTAAGTAAAGAGCAAACCATAATGCAA
GGTAATCAAGAGATGAAAGACTTACATAAAACTAAGTACTAGATCCTACA
TTAGAAGCACTGACAGAATGCAATCAGTGCACAGAAAAAGCAATCAAACT
CAGGTTGGAGAAGAAAACTACCAAAGCAACACTTAAAGGGAGATATAAGC
TGAGAGCAGTAATGAATATGTGTGCTGTTAAAGGTAGAAAGGAGCAGGGT
AAGGGAGAAACAGCAGTTACAAAGAGAAAAAAATCATGAAACTACAAAAA
GTACAGAGACGCTTAAGGCAACATTCTGGAATTAACTGAGAAGTAGGTCC
CATGGTCAGCTGTAGTAGATGAACTAACATAGCTGGGGAAGGCAACAGAA
GGCCTTGAGTATCAATCTAAGACGCTCAAATCTTCACCTTGTGCATTCCA
CTGTACAATGTAAAACTTACAAGGCAAATGAGCATCAGTGAGATGCAACT
AGAAATAATTGCCTTGAGGGAACTATAAAGTTTAAAAATATGACCTAACT
TGGTGTTGGGGAAGTGGCTCCGTAGCAAAGCGACTGTC

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTTCAGAAATTCCTAAACTGAGGTCTAGAATGGAAAATATC
TGTTTCATGGAGTCTCTCACCCTGAATATTGGCTGGGGCAGGGGGCAGAG
AGAGAGAGGGAGGGAGGGAGCCAGGTATATATCTCTTTCTCCCTCTTTTT
TTCTTTTTGCCTTTTTCTCCCTTTTCTTTTTTTTCTCCCCCTTCCTCTTC
CTTTTTTCTTTTTACCTCCTTTTTCTTTCCTTTCTCCCCTTTTTCCCTCT
CTCCCCCCTTTTTTTTTTTTTCCCTTTTTTCCCTTCTCTCTTCTTCCTCC
CCCTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCTCCTTTCCCCTTCCTT
TTCTTTCCTTTCTGTTGCCCCCCCCGCGCAAAAATACAACCTTTTTTTCT
CCGCTGGCCTTCCTCTTTCCCCCCCCCTTTCCCCCCTCTCTTTTATCCTC
TTCTTTCTTTATTTTTCCTCTTCTTTTCCCTTCTTCCCTTCCCCCTCTTT
TTCCCCCCCCCCCCTTTTTTCCCCCCCTCTCCTTTCTTTTTTCCCTCCCC
CCTCTTTTTCCTCCTTTCTTTTCCCCCCCCTTTTTCCCCCCCCTCTCTCT
CTTTTCCCCCCTCCCCTTCTTTCCTCCTTTCCCTTTTCGCTCTCCCTTCT
CTCTTCCTTCCCTTCTCTTCCTTTATTTATCCCTTCCCCCTTCTTCCCCC
TTTCTCCTTTTCCCCTCCCCTCCTTCCTCTTCCCCTCCTTTATCCCTCTC
TTTCTCCCCCCCCCTTTTCCCTCTTTTTTTTN

Query= MSMg01no317_f01.b1 MSMg01no317_f01.b1 CHROMAT_FILE:
MSMg01no317_f01.b1 PHD_FILE: MSMg01no317_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:19 2005
         (670 letters)



>mm_chr1_38178207_38179277
          Length = 1071

 Score = 1236 bits (639), Expect = 0.0
 Identities = 660/667 (98%), Gaps = 1/667 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccataggatgcctactacaggtgattgtcttccctgtctgctcgcccacgttcct 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccataggatgcatactacaggtgattgtcttccctgtctgctcgcccacgttcct 264

                                                                       
Query: 65  cctttcccaatccagatcagattaacagtgcccttcaaacacactgccatttgcagtttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctttcccaatccagatcagattaacagtgcccttcaaacacactgccatttgcagtttt 324

                                                                       
Query: 125 caaggtaagtaaagagcaaaccataatgcaaggtaatcaagagatgaaagacttacataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaggtaagtaaagagcaaaccataatgcaaggtaatcaagagatgaaagacttacataa 384

                                                                       
Query: 185 aactaagtactagatcctacattagaagcactgacagaatgcaatcagtgcacagaaaaa 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 aactaagtactagatcctacattagaagcactgacagaatgcaatcagtgcacagagaaa 444

                                                                       
Query: 245 gcaatcaaactcaggttggagaagaaaactaccaaagcaacacttaaagggagatataag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaatcaaactcaggttggagaagaaaactaccaaagcaacacttaaagggagatataag 504

                                                                       
Query: 305 ctgagagcagtaatgaatatgtgtgctgttaaaggtagaaaggagcagggtaagggagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgagagcagtaatgaatatgtgtgctgttaaaggtagaaaggagcagggtaagggagaa 564

                                                                       
Query: 365 acagcagttacaaagagaaaaaaa-tcatgaaactacaaaaagtacagagacgcttaagg 423
           |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 565 acagcagttagaaagagaaaaaaaatcatgaaactacaaaaagtacagagacgcttaagg 624

                                                                       
Query: 424 caacattctggaattaactgagaagtaggtcccatggtcagctgtagtagatgaactaac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caacattctggaattaactgagaagtaggtcccatggtcagctgtagtagatgaactaac 684

                                                                       
Query: 484 atagctggggaaggcaacagaaggccttgagtatcaatctaagacgctcaaatcttcacc 543
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atagctgaggaaggcaacagaaggccttgagtatcaatctaagacgctcaaatcttcacc 744

                                                                       
Query: 544 ttgtgcattccactgtacaatgtaaaacttacaaggcaaatgagcatcagtgagatgcaa 603
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 745 ttgtgcattccactgtacaatgtaaaacttacaaggcaaatgagcgtcagtgagatgcaa 804

                                                                       
Query: 604 ctagaaataattgccttgagggaactataaagtttaaaaatatgacctaacttggtgttg 663
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctagaaataattgccttgggggaactataaagtttaaaaatatgacctaacttggtgttg 864

                  
Query: 664 gggaagt 670
           |||||||
Sbjct: 865 gggaagt 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space:   700260
Effective search space used:   700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)