CCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGTCACTCCTAACGTGGCACCCCCAAGACCAACCATTTTAA
GGACTCCCCTCTGACCATTAATAGAAGCTCAGGTTTCTAGTATTCCAGAG
CCTCCAAATACAGCTTGTTCTTGTCTCTTGGCATTACCTTGCATTGCTAT
AATGAACAAGACTTCAATACCCCTGGTCAGTACATAGGCCAAGAATCCCA
CTTCATTTTTGCTCGGAACATTCTAGCATTCTAGTCTAAGTCCACAAACA
CCATAGCCAGCTCTGCCTTTATGGGCAGTTCACATTCCATGCCATAGACT
TGCCATTTCATGTGACACTGCCCTACCTTACCTAGGTACCATGGGGCAAG
ATGACCTTGATCCCATAAACCGACTTCGATGTAAAGTTGGTAGAAACTAT
GTGAATTAGTGAGGGGGTGGATAGGATACAATCAGGTTGAAAAGGCTCCT
TATGGAAATCAAATTTCTGGATGCTATTCTAAGTGAAAGAGGAGTCACTG
AGGAGCAGACACAGAGATGTGACTGGATTTGACTTATTCTTGCAGTGATA
ACCCTTGCTGCTAAGTAGACAATGGGTTGTAGTGAAGGAAGTAGAGAAAG
GGGGAGGGGGTAATACTCCATTCTTCTGCAGGCCTGTTTATCCATTTCCA
TTTTCTATTCCTCACCCTTGTTTTTTTCCCCTTATTTTTTCTTCTG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGGGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGCCCATAGCAGCATTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTT
CCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTA

Query= MSMg01no317_h06.b1 MSMg01no317_h06.b1 CHROMAT_FILE:
MSMg01no317_h06.b1 PHD_FILE: MSMg01no317_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:28 2005
         (612 letters)



>mm_chr1_14157346_14158354
          Length = 1009

 Score = 1017 bits (526), Expect = 0.0
 Identities = 561/574 (97%), Gaps = 3/574 (0%)
 Strand = Plus / Minus

                                                                       
Query: 39  gaccaaccattttaaggactcccctctgaccattaatagaagctcaggtttctagtattc 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gaccaaccattttaaggactcccctctgaccattaatagaagctcaggtttctagtattc 606

                                                                       
Query: 99  cagagcctccaaatacagcttgttcttgtctcttggcattaccttgcattgctataatga 158
           |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 605 cagagcctccaaatacagcttgttcttgcctcttggcattaccttacattgctataatga 546

                                                                       
Query: 159 acaagacttcaatacccctggtcagtacataggccaagaatcccacttcatttttgctcg 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 acaagacttcaatacccctggtcagtacataggccaagaatcccacttcatttttgctcg 486

                                                                       
Query: 219 gaacattctagcattctagtctaagtccacaaacaccatagccagctctgcctttatggg 278
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 485 gaacattctagcattctagtctaagtccacagacaccatagccagctctgcctttatggg 426

                                                                       
Query: 279 cagttcacattccatgccatagacttgccatttcatgtgacactgccctaccttacctag 338
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 425 cagttcacattccatgccatagacttgccatttcttgtgacactgccctaccttacctag 366

                                                                       
Query: 339 gtaccatggggcaagatgaccttgatcccataaaccgacttcgatgtaaagttggtagaa 398
           ||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||   
Sbjct: 365 gtaccatggggcaagataaccttgatcccataaactgacttcaatgtaaagttggta--- 309

                                                                       
Query: 399 actatgtgaattagtgagggggtggataggatacaatcaggttgaaaaggctccttatgg 458
           | | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 308 agtgtgtgaattagtgagggggtggataggatacactcaggttgaaaaggctccttatgg 249

                                                                       
Query: 459 aaatcaaatttctggatgctattctaagtgaaagaggagtcactgaggagcagacacaga 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaatcaaatttctggatgctattctaagtgaaagaggagtcactgaggagcagacacaga 189

                                                                       
Query: 519 gatgtgactggatttgacttattcttgcagtgataacccttgctgctaagtagacaatgg 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gatgtgactggatttgacttattcttgcagtgataacccttgctgctaagtagacaatgg 129

                                             
Query: 579 gttgtagtgaaggaagtagagaaagggggagggg 612
           ||||||||||||||||||||||||||||||||||
Sbjct: 128 gttgtagtgaaggaagtagagaaagggggagggg 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1009
Length adjustment: 10
Effective length of query: 602
Effective length of database: 999
Effective search space:   601398
Effective search space used:   601398
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)