Query= MSMg01no317_i03.b1 MSMg01no317_i03.b1 CHROMAT_FILE:
MSMg01no317_i03.b1 PHD_FILE: MSMg01no317_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:31 2005
(322 letters)
>mm_chr1_73041715_73042436
Length = 722
Score = 584 bits (302), Expect = e-171
Identities = 314/318 (98%)
Strand = Plus / Minus
Query: 5 gaattcaatatctatatacgcagacagtaggaagagagagatacgctaagcctgactgga 64
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaattcaatatctatataggcagacagtaggaagagagagatacgctaagcctgactggt 658
Query: 65 gcatctgagaccttaccgctcatcccctatgtcacatttgtccagtaaggccacacctac 124
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gcatctgagaccttaaagctcatcccctatgtcacatttgtccagtaaggccacacctac 598
Query: 125 tccaacaaggccacacctcctaatagtgccattctctatgaccctatgggggctgttttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tccaacaaggccacacctcctaatagtgccattctctatgaccctatgggggctgttttc 538
Query: 185 attcaaaccaccacagatgggtagacagaaggatatcaattcaagaagaagatgctaatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 attcaaaccaccacagatgggtagacagaaggatatcaattcaagaagaagatgctaatt 478
Query: 245 aaagtgggaccaagtagagctgaatctctgcttcagtcttgagttccctgcctgtcagtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aaagtgggaccaagtagagctgaatctctgcttcagtcttgagttccctgcctgtcagtc 418
Query: 305 ccctgatgcacaccgttg 322
||||||||||||||||||
Sbjct: 417 ccctgatgcacaccgttg 400
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_i03.g1 MSMg01no317_i03.g1 CHROMAT_FILE:
MSMg01no317_i03.g1 PHD_FILE: MSMg01no317_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:32 2005
(302 letters)
>mm_chr1_72872600_72873301
Length = 702
Score = 505 bits (261), Expect = e-147
Identities = 297/321 (92%), Gaps = 21/321 (6%)
Strand = Plus / Plus
Query: 1 cgcttctcaggccccttcctcccttattacctctggagccccagaggcacattttcttca 60
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 184 cgcttctcaggccccttcctcccttattacctctggagccccagagg-a-attttcttca 241
Query: 61 gcaggccttgcagaatcctccggatattgactgttttactaaatctggtgtac------- 113
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gcaggccttgcagaatcctccggatattgactgttttactaaatctggtgtactttcctc 301
Query: 114 ------------tttcctctcagagttttatttattttttcctccccacccttcgttgct 161
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcagagttttattttcctctcagagttttatttattttttcctccccacccttcgttgct 361
Query: 162 ttcattctaagcctgtgaaattcagtctttctgcttcccaaaactcttaaataggttgga 221
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 362 ttcattctaagcctgtgaaattcagtctttctgcttctcaaaactcttaaataggttgga 421
Query: 222 gtcttctgcaggcaacagatgtggtatgttccctgggtcacttttccttactggctgcgg 281
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 422 gtcttctgcaggcaacagatgtggcaggttccctgggtcacttttccttactggctgcgg 481
Query: 282 ggatgggggtggggtgagggg 302
|||||||||||||||||||||
Sbjct: 482 ggatgggggtggggtgagggg 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space: 203049
Effective search space used: 203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
