BAC Information

Click to search

BAC

Clone NameMSMg01-317I16
Chromosome1 (Build37)
Map Location 51,509,502 - 51,656,944
singlet/doubletdoublet
Overlap geneObfc2a
Upstream geneTmeff2, Sdpr, LOC383504
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317I16.T7 (MSMg01no317_i16.b1)MSMg01-317I16.TJ (MSMg01no317_i16.g1)
ACCAG437579AG437580
length662594
length of high quality
(start - end)		528 (46 - 573)197 (85 - 281)
definitionCHROMAT_FILE: MSMg01no317_i16.b1 PHD_FILE: MSMg01no317_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:34 2005CHROMAT_FILE: MSMg01no317_i16.g1 PHD_FILE: MSMg01no317_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,656,491 - 51,656,944)(51,509,502 - 51,509,698)
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCTCTCTATAGGCAAAGAGGTATGGTGGGAACTGTGGAGGAGAGTG
CTTGCTGGCAGCCAGGCAGGCTTATATATTCAGCTCTCATACACAGAGCA
TAGACAATTGCTTAGGAATGGCACTACCCATGCTGTGCTGTTAACAACAG
TTAATGACTAAGACAACCCCCAGAGGACATGCCCACAAGATCTAGACAAT
TTCTCAAAGGAGATTCTCTTACTAGATAATTGTGGCTGGCCAAGTTGACA
GCTAAAGCTAAGCAGGACAATTGGTGACCGAACTATACGTTTGGTGTTAA
GACAAGACTTAGCTCTTTCAAAGCTAGAGACACCTGGCACTTGTCACACC
TGTCACTTGCCATTCCCACAACTGTATAGAGTAGGTACATTGGAAAGGAG
TTTAAGGTGAAGAATGTGTGTGGCATTTATCAAGCATTCATGAAAGCAGA
TGGCTCAGGCAGAAAAATCTTTTCATTTTTCTTCCCCTTGATAAGACTCA
AACCAAAGCTTCCCTCATACAGCCACCCAGATCTGGTGTTTTCTTAAGAT
AAACGTAACATAGAAAAGATTACGGAAGTAAGCCCTAGAAATATTAGAAG
AAATAATTCTAA

TCTTATNTNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTCCTGAAAGGTTA
AACAGCAAAATTAAACTCATTATCTTCCTACAGCTTCTCAAGCCAGCAAA
TCAGTTCCCTAAGTTATTTTATCTTTTGTTGCTATTTAATTTTTTCTCTC
CTGTCTTGTGGGACAGTCTAGCCCTTCCTTCCTCCTCCTTCTTAGGTTCT
CTCTGTGTCCATTTTCTTCCCATTTCTACCGCTCACAACTTCTTTTATCT
CAAAACTGAAAATCTTTGCAACCCGTTCCAGTTTGTTTTATCTTCCTCCA
AAGTTTGGAAAGGTGTCCAACCCTGGGGGCGAAAGGGGGGGGCCCCTAAA
AAAAGGGGGAAGGGGGGGAAAACAAAAAAGGTCCTTTCTTTGGGAAAATT
CCCCCCCAAATTTTTTTTTTTGTGGGGAAAAGGCCCCCCCCCCAACAAAA
AATTTTTAAAAAACCTTTTTCTCGCGGGGGGGTTTTAAAAAAAAAAAAAA
ATTCTTTTCAAAAAAAAAAAAACTAGGGGGGGGGGTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_i16.b1 MSMg01no317_i16.b1 CHROMAT_FILE:
MSMg01no317_i16.b1 PHD_FILE: MSMg01no317_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:34 2005
         (528 letters)



>mm_chr1_51656017_51656944
          Length = 928

 Score =  816 bits (422), Expect = 0.0
 Identities = 446/454 (98%)
 Strand = Plus / Minus

                                                                       
Query: 75  gcttatatattcagctctcatacacagagcatagacaattgcttaggaatggcactaccc 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 928 gcttatatattcagctctcatacacagagcatagacaattgcttaggaatggcactacct 869

                                                                       
Query: 135 atgctgtgctgttaacaacagttaatgactaagacaacccccagaggacatgcccacaag 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 atgctgtgctgttaacaacagttaatgactaagacaacccccagaggacatgcccacaag 809

                                                                       
Query: 195 atctagacaatttctcaaaggagattctcttactagataattgtggctggccaagttgac 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 atctagacaatttctcaaaggagattctcttactagataattgtggctggccaagttgac 749

                                                                       
Query: 255 agctaaagctaagcaggacaattggtgaccgaactatacgtttggtgttaagacaagact 314
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||
Sbjct: 748 agctaaagctaagcaggacaattggggactgaactatacgtttggtgttaagacaggact 689

                                                                       
Query: 315 tagctctttcaaagctagagacacctggcacttgtcacacctgtcacttgccattcccac 374
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   | 
Sbjct: 688 tagctctttcaaagctagagacacctggcacttgtcacacctgtcacttgccatttgtag 629

                                                                       
Query: 375 aactgtatagagtaggtacattggaaaggagtttaaggtgaagaatgtgtgtggcattta 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aactgtatagagtaggtacattggaaaggagtttaaggtgaagaatgtgtgtggcattta 569

                                                                       
Query: 435 tcaagcattcatgaaagcagatggctcaggcagaaaaatcttttcatttttcttcccctt 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tcaagcattcatgaaagcagatggctcaggcagaaaaatcttttcatttttcttcccctt 509

                                             
Query: 495 gataagactcaaaccaaagcttccctcatacagc 528
           ||||||||||||||||||||||||||||||||||
Sbjct: 508 gataagactcaaaccaaagcttccctcatacagc 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no317_i16.g1 MSMg01no317_i16.g1 CHROMAT_FILE:
MSMg01no317_i16.g1 PHD_FILE: MSMg01no317_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:34 2005
         (197 letters)



>mm_chr1_51509302_51509898
          Length = 597

 Score =  381 bits (197), Expect = e-110
 Identities = 197/197 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctcctgaaaggttaaacagcaaaattaaactcattatcttcctacagcttctcaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctcctgaaaggttaaacagcaaaattaaactcattatcttcctacagcttctcaagcc 260

                                                                       
Query: 61  agcaaatcagttccctaagttattttatcttttgttgctatttaattttttctctcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaaatcagttccctaagttattttatcttttgttgctatttaattttttctctcctgt 320

                                                                       
Query: 121 cttgtgggacagtctagcccttccttcctcctccttcttaggttctctctgtgtccattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgtgggacagtctagcccttccttcctcctccttcttaggttctctctgtgtccattt 380

                            
Query: 181 tcttcccatttctaccg 197
           |||||||||||||||||
Sbjct: 381 tcttcccatttctaccg 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |