BAC Information

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BAC

Clone NameMSMg01-317J06
Chromosome1 (Build37)
Map Location 140,599,812 - 140,600,096
singlet/doubletsinglet
Overlap geneLOC667745
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363
Downstream geneLhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317J06.T7 (MSMg01no317_j06.b1)MSMg01-317J06.TJ (MSMg01no317_j06.g1)
ACCAG437605AG437606
length749754
length of high quality
(start - end)
315 (44 - 358)288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no317_j06.b1 PHD_FILE: MSMg01no317_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:36 2005CHROMAT_FILE: MSMg01no317_j06.g1 PHD_FILE: MSMg01no317_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCTTTCCAGACTTTTATCATGATGGGGTGTTAGATTTTGTCAA
ATGTTTTCTCAGCATCTAACGAGATGATTACATGGTTTTTGTCTTTGAAT
TTGTTTATATAATGGATTACATTGATGGATTTCTGTATATTAAACCATCC
CTGCATCCCTGGGATGAAGCCTAGTTGATCATGATGGATGATTATTTTGA
TGTGTTCTTGGATTCGGTTATCGAGAATTTTATTGAGTATTTTTACATTG
TTTTTCATAAGGGAAATTGGTTTGAAGTTCTCTTTATTTGTTGGGTCTTT
CTGTGGTTTATTTATCACACCCCCCCCCCCCTTCCTAGAATGATTTGGGT
AGAGTACCTTCTGTTTCTATTCGTGAAATAGTTTGAGGAGAATGGGAATT
AGGTCTTTTTTGAAGGTCTGGTAGAACACTGCACTAAACCCATCGGATCT
TGGCCTTTTTTGTTGTTGTTGAGAGACTATTAATGACTGCTTCTATTTCT
TTGGGGGATATGGGACTGTTTGGATCATTAATCTGATCCTGATCTAATTT
GGTACCTGGTATCTGTGTAGGAAATTGTCCATTTCAGTCAGGTTTTCCAG
TTTTGTTGAGTATCGCCCTTTGCAGTACGACCTGATGAGGTTTTGGATTT
CCTCCTGTTCGGTTGCTATGCTTCCCTTTTCATTTCTGAATTTGTTAGC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGTGGCTTTGGGCTGTGGTGAGATCC
AAGCCCCTGTTGCTTTTGCTGTAGCTTAGATGGCTTTGCTTCCACCCATC
CAGCCTCAGCGTTCAGAAGAATAAGAAGCTGAAGATTTTAGTTCTCAATG
TGAAAAATGAAACTTGCTTTTTTTTCTTGCAGGATTCTTTAAGATATTTT
GGAACCTAAAGGAGAAGCAGAGAAGAGCCAAGGATAACAAACCATTGGTC
ACCGAGGACATTAATTATAAGATAAAGCAGCTCCATCCAGTGGTAAAGAA
CACTAACACTTTTTGTCTCACCCCCCCGCTCCCTTCTATAACAAGGAAGG
CTTCTATGGGCCTGGAAAAATTCTGACTTCTCAAGCCAGCTCTCCTGTTT
GAGGAAGCAGCATGCCAAGAAAACAGAATGATACAACTTCTGAAGGAATT
CACAACAAACACATACCATAAATCTTAATATATATAAAATATATACATAT
ATATACACACATATACATATATATATATATGAACACAAAATATGGACTCT
AATCACTTAATAAAAACTGTCAATGTAAACATGGTATGGGAAGAAAACAT
ATTCTTAGAACACAAGGAAAAAGTACAGGTATGTAATTAGAATGTTCTCA
TTGGCCAAAAATAATAACAGAGAGCAAAAATAACAATGTTACACGAAAAC
CACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_j06.g1 MSMg01no317_j06.g1 CHROMAT_FILE:
MSMg01no317_j06.g1 PHD_FILE: MSMg01no317_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:36 2005
         (288 letters)



>mm_chr1_140599612_140600299
          Length = 688

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtggctttgggctgtggtgagatccaagcccctgttgcttttgctgtagcttagatg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 actgtggctttgggctgtggtgagatccaagcccctgttgcttttggtgtagcttagatg 260

                                                                       
Query: 61  gctttgcttccacccatccagcctcagcgttcagaagaataagaagctgaagattttagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttgcttccacccatccagcctcagcgttcagaagaataagaagctgaagattttagt 320

                                                                       
Query: 121 tctcaatgtgaaaaatgaaacttgcttttttttcttgcaggattctttaagatattttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcaatgtgaaaaatgaaacttgcttttttttcttgcaggattctttaagatattttgg 380

                                                                       
Query: 181 aacctaaaggagaagcagagaagagccaaggataacaaaccattggtcaccgaggacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacctaaaggagaagcagagaagagccaaggataacaaaccattggtcaccgaggacatt 440

                                                        
Query: 241 aattataagataaagcagctccatccagtggtaaagaacactaac 285
           ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattagaagataaagcagctccatccagtggtaaagaacactaac 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)