Query= MSMg01no317_n01.b1 MSMg01no317_n01.b1 CHROMAT_FILE:
MSMg01no317_n01.b1 PHD_FILE: MSMg01no317_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:52 2005
(702 letters)
>mm_chr1_104234423_104235525
Length = 1103
Score = 1290 bits (667), Expect = 0.0
Identities = 691/699 (98%), Gaps = 1/699 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgttttaacctaactaattttt-cagtaaagaatgccattggcatacatacaa 63
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgttttaaagtaactaattttttcagtaaagaatgccattggcatacatacaa 264
Query: 64 ctacaacacaaagtaaaatgttttcacaataatggtagaattaaatagggcagaggtggc 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctacaacacaaagtaaaacgttttcacaataatggtagaattaaatagggcagaggtggc 324
Query: 124 agagtatgaggtagtggaatgtgcctagaatcttggtaaggatgagtgtgttggaagacc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagtatgaggtagtggaatgtgcctagaatcttggtaaggatgagtgtgttggaagacc 384
Query: 184 cagaacctctggaaagatggtatgagcttcacctgcttccaaccaggcacctgacatgtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagaacctctggaaagatggtatgagcttcacctgcttccaaccaggcacctgacatgtg 444
Query: 244 accacagtttcccatgtaggggattataaccattagtcacattggggcagtgcccacaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 accacagtttcccatgtaggggattataaccattagtcacattggggcagtgcccacaag 504
Query: 304 cctctccccatgcagaagaggcatctctaacatctcagaccaagcctatagaaagcatct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctctccccatgcagaagaggcatctctaacatctcagaccaagcctatagaaagcatct 564
Query: 364 gctatcggaacccaacccatcacaaaaatgtatgtaagatccaatccggaaggaataaag 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctatcggaacccaacccatcacaaaaatgtatgtaagatccaatccggaaggaataaag 624
Query: 424 gtatgtgagaattactccatcgcctgagagaatctgtaatctataggctgtaacacttcc 483
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtatgtgagaattactccatcacctgagagaatctgtaatctataggctgtaacacttcc 684
Query: 484 tagggaagagagcactattctgaagttttcactgctggaagctcctctgatcctttcatt 543
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 685 tagggaagagagcactcttctgaagctttcactgctggaagctcctctgatcctttcatt 744
Query: 544 ctagctgagacctccactggctcttcacagggcagcatcttggtggcctgggcagcagta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctagctgagacctccactggctcttcacagggcagcatcttggtggcctgggcagcagta 804
Query: 604 gagtgaatgcagctgtggtgtcctgagcagcacagctgtcacacttttctctcccagctt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gagtgaatgcagctgtggtgtcctgagcagcacagctgtcacacttttctctcccagctt 864
Query: 664 atgccctctccccttcacttgaacactcacacaagagca 702
|||||||||||||||||||||||||||||||||||||||
Sbjct: 865 atgccctctccccttcacttgaacactcacacaagagca 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1103
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1093
Effective search space: 756356
Effective search space used: 756356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no317_n01.g1 MSMg01no317_n01.g1 CHROMAT_FILE:
MSMg01no317_n01.g1 PHD_FILE: MSMg01no317_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:52 2005
(590 letters)
>mm_chr1_104394030_104395021
Length = 992
Score = 1025 bits (530), Expect = 0.0
Identities = 571/586 (97%), Gaps = 4/586 (0%)
Strand = Plus / Minus
Query: 8 taaaggtgagtagacatgctctgtgtgcattttcataactgatatagtgaaaactcaaag 67
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 792 taaaggtgagtaggcatgctctgtgtacattttcataactgatatagtgaaaactcaaag 733
Query: 68 gagtattttaagattggagataatatagacctaattaagatgagaatttagccataacct 127
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gagtaattgaagattggggataatatagacctaattaagatgagaatttagccataacct 673
Query: 128 cacagaacagggctggtggagcagaacactagagaattgatgtccaatgaacttgagttt 187
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 672 cacagaacagggctggtggagcagaacactagagaattgatgtccagtgaacttgagttt 613
Query: 188 gaatttgatgcttgacatttgacaaatgtgtataacattaaaaaaaatgatttacctatt 247
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 612 gaatttgatgcttgacatttgacaaatgtgtataacatt-aaaaaaatgatttacctatt 554
Query: 248 ctgtagttaacatcactcaactttaaggtacatattctaatgaaatgttgtgaaatttat 307
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 553 ctgtagttaacatcactcaactttaaggtacatattctaattaaatgttgtgaaatttat 494
Query: 308 atgatcagtaagttaaaattatatgattagtaagttaaaacctctgcctatatgtaatag 367
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atgatcaataagttaaaattatatgattagtaagttaaaacctctgcctatatgtaatag 434
Query: 368 aatattctttttaatttggggttagaggtcactaaatggtggtaaactcactaacaccat 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aatattctttttaatttggggttagaggtcactaaatggtggtaaactcactaacaccat 374
Query: 428 tgagagaaaaataaatcatccatggaattactctcccttctctcagagcctt---ttttt 484
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 373 tgagagaaaaataaatcatccatggaattactctcccttctctcagagccttgttttttt 314
Query: 485 ccaaaatgtgcatttgaaaacctaattcaaattcagggaagatatattgttagtaaatca 544
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 313 ccaaaatgtgcatttgaaaacctaattaaaattcagggaagatatattgttagtaaatca 254
Query: 545 attgtcttaaattgggagaacctaaatagattcccagaactcacat 590
||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 253 attgtcttaaactgggagaacctgaatagattcccagaactcacat 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 992
Length adjustment: 10
Effective length of query: 580
Effective length of database: 982
Effective search space: 569560
Effective search space used: 569560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
