BAC Information

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BAC

Clone NameMSMg01-317O03
Chromosome1 (Build37)
Map Location 115,788,886 - 115,789,222
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317O03.T7 (MSMg01no317_o03.b1)MSMg01-317O03.TJ (MSMg01no317_o03.g1)
ACCAG437830AG437831
length776726
length of high quality
(start - end)
344 (76 - 419)341 (73 - 413)
definitionCHROMAT_FILE: MSMg01no317_o03.b1 PHD_FILE: MSMg01no317_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:57 2005CHROMAT_FILE: MSMg01no317_o03.g1 PHD_FILE: MSMg01no317_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAAAATCCGCGGA
ATTCCTTTCTCATTCACTTAGAATTTTTGTCATAGCAATGAGAAAAATAT
CTAATACTGCCTGGATACATGTTCACACATACATAAGTACATACATACAT
ACATGCATACATACATACATACATGCATATACACACACATACACCCATGT
GCTCACATGCACTTACACACATATGAAACAGACAGAAAGAAAGAGATAGA
GAGAGATAAAGAGACAGAGAGAGACAGATAGATCATACTTCCACAGTCCC
TATAAGAACACCACTCACACACACTATAAACTTAAGCCTCCACCTCATCA
AAGACCACAACAGTTATGCATAAAATCATCTTGGGGGCCACATAATTTTC
AGGGGTCATTCAATATTCACACAGCAACATTTATACATCTGTTATTAGAA
AAGCAGACAAAGAAAAGTCACTTTCTGGGAGGGTAGGCCTCCCTTAGCGA
TCCATAAACTGTCTTTCCTCTAATGTGGCTGAGGTAAAGAGTACGTTGAG
GGATAGGCTTGGGAGCATAACATTTCTTCTTTACTCTTTTCTAAAAGTAG
ATGTACAGGACAAGCATTCTGGTGAAAAGCAAATTAAGCAAGAATTGCCT
TGATTTTGGGCTTCCTGCACAAGTGAAATGACATAAAGTCAGGCATGTGG
CTGTCTCCATAAAGCAAGCTGCAGATAACCATTTGCATCATACATAGATC
TATGAATGTCCTGTCTTCTCTGTGAN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTGGAATTTTGATGGGGATTGCATTG
AATCTGTAGAGTGCTTTTGGCAAGATAGCCATTTTTACAATGTTGATCTT
GCCAATCCATGAGCATGGGAGATCTTTCCATTTTCTGAGATCTTCTTTAA
TTTCTTTCCTCAGGGACTTGAAGTTTTTATTTTACAGATCTTTCACTACC
TTAGTTAGAGTCACGCCAAGATATTTTATATTATTTGTGACTATTGAGAG
GGGGGTTGTTTCCCTAATTTCTTTCTCAGCCTGTTTATTCTTTGTGTAGA
GAAAGGCCATTGATTTGTTTGAGTTAATTTTATATCCAGCTACTTCACCG
AAGCTGTCTATCACGCCCACCAGTTCTATGGTGGAATTTTTAGGGTCACT
TATATATACTATCATATCATCTGCAAAAAGTGATATTTTGACTTCATCAT
TTCCAATTTGTATCCTAAGATCTCCTTTTGTTGTCGAATTGCTCTGTCTA
GGACTTCAAGTACTATGTTGAAGAGGTAGGGAGAAAGTGGGCAGCCTTGT
CTAGTCCCTGATTTTAGTGGGATTGCTTCCAGCTTCTCACCATTTACTTT
GATGTTGGCTACTGGTTTGCTGAAGATTGCTTTTATCATGTTTAGGTATG
GGCCTTGAATTCCTGAATTTTCCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_o03.b1 MSMg01no317_o03.b1 CHROMAT_FILE:
MSMg01no317_o03.b1 PHD_FILE: MSMg01no317_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:57 2005
         (344 letters)



>mm_chr1_115788479_115789222
          Length = 744

 Score =  586 bits (303), Expect = e-172
 Identities = 330/341 (96%), Gaps = 4/341 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gtcatagcaatgagaaaaatatctaatactgcctggatacatgttcacacatacataagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 744 gtcatagcaatgagaaaaatatctaatactgcctggatacatgttcatacatacataggt 685

                                                                       
Query: 64  acatacatacatacatgcatacatacatacatacatgcatatacacacacatacacccat 123
           |||| ||||||||||||||||||||||||||||    ||||||||||||||||||||| |
Sbjct: 684 acatgcatacatacatgcatacatacatacata----catatacacacacatacacccgt 629

                                                                       
Query: 124 gtgctcacatgcacttacacacatatgaaacagacagaaagaaagagatagagagagata 183
           ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 628 gtgctcacatgcacttacatacacatgaaacagacagaaagaaagagatagagagagata 569

                                                                       
Query: 184 aagagacagagagagacagatagatcatacttccacagtccctataagaacaccactcac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aagagacagagagagacagatagatcatacttccacagtccctataagaacaccactcac 509

                                                                       
Query: 244 acacactataaacttaagcctccacctcatcaaagaccacaacagttatgcataaaatca 303
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acacacaataaacttaagcctccacctcatcaaagaccacaacagttatgcataaaatca 449

                                                    
Query: 304 tcttgggggccacataattttcaggggtcattcaatattca 344
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcttgggggccacataattttcaggggtcattcaatattca 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)