BAC Information

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BAC

Clone NameMSMg01-318A08
Chromosome1 (Build37)
Map Location 8,603,455 - 8,603,770
singlet/doubletsinglet
Overlap geneSntg1
Upstream geneLOC665069, LOC100039408
Downstream geneLOC100039474, LOC620444, EG665007, LOC665103, LOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318A08.T7 (MSMg01no318_a08.b1)MSMg01-318A08.TJ (MSMg01no318_a08.g1)
ACCAG437931AG437932
length734732
length of high quality
(start - end)
320 (37 - 356)291 (71 - 361)
definitionCHROMAT_FILE: MSMg01no318_a08.b1 PHD_FILE: MSMg01no318_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:07 2005CHROMAT_FILE: MSMg01no318_a08.g1 PHD_FILE: MSMg01no318_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAA
TAGATATTTCGAAAATGATACTTTAAAATATTTACAATAGGATATTTTAA
AACATGTATAAAATGCATACATTAAATCAAATATGTATAACATACCATCA
CTACACAAAATCAAAACACTGACCCTCCTATAAGCTACAATCTGTCTGCC
TCACAGGAGGTCTCTGGTAAACAGGGAAACGTAAGAATTTCACCCAAATG
CACAGACCAGCTAGGGCACACACAGAGCACAGCTGACATAGGACCTACCC
ACCCTCCTGAGCTCCATCTTGCTTCTAGTCTGCTTTTCCATGCAGGCCAG
ATCAGCATTTTTATTCCCTCCCACTCTCCCTACCACCTGTGTACCTCCCG
GGAGGTATGTTTTCCCACCCACACACAAAACTGCTCTAACCAGATACAGC
ACTGCCTGCCTCCCTGGAGATTGGCTCCAATCCAGGTCACAGAGCTCTAT
ATAACTCCAAGGAGGCTAGCTCCAGTAAGAGACTCCAGGACCAGTTAACA
CCAGAGATAACCAGATAGCAAAAGACAAAAACAAGGTCATAAGGGATAGG
AACCAGTGCAATTTGGTACCATCAGAACACAGTTCCCCCACCTCAACAAG
CCCCAGATAGTGTAACATGCCTGATAAGCGAGATAATGACCTGAAATTAC
ATCTCATGAAAATGATATAGGTTTTTATTGAAAA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCCGAAAAACACATAAAAGGAGTAGATGGCAAGAAATAAT
TTAACTTAAGGCTAAAATCACCCAAATATAAACAAACAAAGCAATACAAA
GAAACAATTAAATAAATAGTTGGTTTTTTAAGAGTATCTAAAGATTGCCA
AACTCTTGCCCAAATTAACTAAAAGAGCTTCACTGACAGAATTAGGGAAG
AAAGGGGGTAATTAATAACAGGCATTGAGGAAATCCAAGCAATCACAGGA
CATACTTTACAAAACTGCACTCTTTCAAATATGAATATGTAAAAGAATGG
CATAATTTCTTGATTTTTTCCACCCCCCCCCCCCAAATCAACACCAAATA
AACTATTTAAACAGATCCCCACCCCCCAATAAAATAAAAGCAGTAATTAA
ACAAACAAACAAAACTCTCAGGTCCAGGTGGCTTAAGCACAAAATTCTAC
CGGACTTTCGAAGAAGAACTAATGCCAATTTATCTAATATTGTTCCACAT
AATTGAAACAGAAGAAGCCTTTCCCAGCTCATTTTATGACATCATAGTTA
TGTTGACACTTAAACCACATAAAGATGTTATGAAGAAATGGAATTAAGTA
CATAAAAAATAGCACCACCATGATAGAGTAGACTTCATCCCACAGATGTG
AAGGTGGTTCAGCCTACACAAATCAATAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_a08.b1 MSMg01no318_a08.b1 CHROMAT_FILE:
MSMg01no318_a08.b1 PHD_FILE: MSMg01no318_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:07 2005
         (320 letters)



>mm_chr1_8603251_8603970
          Length = 720

 Score =  580 bits (300), Expect = e-170
 Identities = 312/316 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaatagatatttcgaaaatgatactttaaaatatttacaataggatattttaa 64
           |||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattcacaatagataattagaaaatgatactttaaaatatttacaataggatactttaa 264

                                                                       
Query: 65  aacatgtataaaatgcatacattaaatcaaatatgtataacataccatcactacacaaaa 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 aacatgtataaaatgcatacattaaatcaaatatgtataatataccatcactacacaaaa 324

                                                                       
Query: 125 tcaaaacactgaccctcctataagctacaatctgtctgcctcacaggaggtctctggtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaaaacactgaccctcctataagctacaatctgtctgcctcacaggaggtctctggtaa 384

                                                                       
Query: 185 acagggaaacgtaagaatttcacccaaatgcacagaccagctagggcacacacagagcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagggaaacgtaagaatttcacccaaatgcacagaccagctagggcacacacagagcac 444

                                                                       
Query: 245 agctgacataggacctacccaccctcctgagctccatcttgcttctagtctgcttttcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agctgacataggacctacccaccctcctgagctccatcttgcttctagtctgcttttcca 504

                           
Query: 305 tgcaggccagatcagc 320
           ||||||||||||||||
Sbjct: 505 tgcaggccagatcagc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)