CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAATCCGCGGA
ATTCATTGCTGTCTTGTCTGATAAGTCCCTTGTACAGGATGCTCATGTTT
GGTAAGCAAACCAGAGTTTTTCTAAGCGCTACAGTTGAATTATCAGTATA
TTGCTCTTTTCCTTTTTAAACCCAAAGAGGTCTTAATAGGTTGCAGAAAC
CTCAGTCATGTATGACCACATTTGTGTTGTTTATAATGATTATATGATCA
TTTTCAACAAAGATAACAGTATGTTATCAAAAAGTCTTTGGCTATTATAT
GGAACTTGTAAAGAAGAAATAAAATACCAATCACAGAAGCTCCAAAAATA
TAAAATGAAATAAAACTAGTCAATTTTTCCTTTTTTCATTAGATATTTTA
TTTACAATTATATAACATTTCAAACGCCACCCCCTTTCCTACTTTCCCTC
TGAAAACCTCCTATCCCCTCCCCTTTCCCCCTGCTCCCCAACCCACCCAC
TCCTACTTCCTGTCCCTGGCATTCTACTATACTAGGGCATAGAGTCTTCA
CAGGAGCAAGGGCCTCTCCTCCCATTGATGACTGACTAGGCCATCCTCTA
CTACATATGCACCTAGAGCCACGAGTCCCACCATGTGCTTTCTTTGATTG
GTGGTTTAGTCCCAGGGAGCTCTGGAGGTACTGGTTAGTTCATATTGTTG
TTCCTCCTATGGGGCTACTAACCCCTTCAGCTTCTCAAGTACTTTCTCTA
GCCTCTTCATTGGAGACC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCCGAATTCACATGGAGACCAAGCTGTACATCTGC
TACATATGTGCTGTGAGGCCTAGGTACACTCCATGTATATTATTTGGTTG
GTGGTTTATTCTCGGAGAACTCTAAGTGTTCAAGTTAGTTGACTCTGTTG
GTCTCTGGTGAGGAGTTGGAAGGGAATACTTCTTCATTGTTCGTAGTAGT
ATAATTTGTACAACTACTTTGGAAAACAGGAAAGAGTTCTTCCTCAAGAC
CCAGCTATACCATTCCTGTTCATATACTCTAAAGATGCTGTATGATCCCA
CAAAGATACTTGCTCAACTATGTTCATAGGAGATTAATTCATAATAGCCA
GAAATTGGAAACAAACTAGATGCCCCCCACCAGAGGAATGAATGAAGATG
TAGTACATCTACATAATGAAATACTATTCAGCTATTAAAAACAAGAACAG
ATTGCAATCCCACCAGCAATGGAGGAGTGTTCTTCTTTCTCCACATCCTC
TCCAACAGATGTTGTCAATTGAGGTTTAGATCTTAGCCATTCTGATTGGT
GTAAGGTGTAATCTCAGTTGTTTTGATTGCATTTCTCTGATCACTAGGAC
TTTGAACATTTCTTCGGGTACTTCTCAGAAATTAGAGATTCCTCATTTGT
GAATTCTCTGTCTAATTCTGTACCCCATTTTTATTGGGTTCATTGGCTTT
TTTTGGTATTTA

Query= MSMg01no318_d13.b1 MSMg01no318_d13.b1 CHROMAT_FILE:
MSMg01no318_d13.b1 PHD_FILE: MSMg01no318_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:22 2005
         (603 letters)



>mm_chr1_142786877_142787879
          Length = 1003

 Score =  959 bits (496), Expect = 0.0
 Identities = 577/604 (95%), Gaps = 1/604 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccttgtacaggatgctcatgtttggtaagcaaaccagagtttttctaagcgctacagt 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct: 201 tcccttgtacaggatgctcatgtttggtaatcaaaccagagtttttctaagagttacagt 260

                                                                       
Query: 61  tgaattatcagtatattgctcttttcctttttaaacccaaagaggtcttaataggttgca 120
           |||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tgaattgtcagtatattgctcttctcctttttaaacccaaagaggtcttaataagttgca 320

                                                                       
Query: 121 gaaacctcagtcatgtatgaccacatttgtgttgtttataatgattatatgatcattttc 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 321 gaaacctcagtcatgtatgaccacatttgtgttgtttaaaatgattatatgattattttc 380

                                                                       
Query: 181 aacaaagataacagtatgttatcaaaaagtctttggctattatatggaacttgtaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaaagataacagtatgttatcaaaaagtctttggctattatatggaacttgtaaagaa 440

                                                                       
Query: 241 gaaataaaataccaatcacagaagctccaaaaatataaaatgaaataaaactagtcaatt 300
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaataaaatactaatcagagaagctccaaaaatataaaatgaaataaaactagtcaatt 500

                                                                       
Query: 301 tttcc-ttttttcattagatattttatttacaattatataacatttcaaacgccaccccc 359
           ||| | ||||||||| |||||||||||||||||||||||||||||||||| |  | ||||
Sbjct: 501 ttttcattttttcataagatattttatttacaattatataacatttcaaatgttatcccc 560

                                                                       
Query: 360 tttcctactttccctctgaaaacctcctatcccctcccctttccccctgctccccaaccc 419
           ||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct: 561 tttcctagtttccctctgaaaaccccctatcccctccacattccccctgctccccaaccc 620

                                                                       
Query: 420 acccactcctacttcctgtccctggcattctactatactagggcatagagtcttcacagg 479
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 acccactcctacttcctgtccctggcattctactatactagggcatagagccttcacagg 680

                                                                       
Query: 480 agcaagggcctctcctcccattgatgactgactaggccatcctctactacatatgcacct 539
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 681 agcaagggcctctcctcccattgatgactgactaggccatcccctgctacatatgcacct 740

                                                                       
Query: 540 agagccacgagtcccaccatgtgctttctttgattggtggtttagtcccagggagctctg 599
           ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agagccatgattcccaccatatgctttctttgattggtggtttagtcccagggagctctg 800

               
Query: 600 gagg 603
           ||||
Sbjct: 801 gagg 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)