BAC Information

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BAC

Clone NameMSMg01-318H07
Chromosome1 (Build37)
Map Location 4,799,725 - 4,799,941
singlet/doubletsinglet
Overlap geneLypla1
Upstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15
Downstream geneTcea1, LOC619829, Rgs20, Atp6v1h, EG636659, Oprk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318H07.T7 (MSMg01no318_h07.b1)MSMg01-318H07.TJ (MSMg01no318_h07.g1)
ACCAG438254AG438255
length776827
length of high quality
(start - end)
221 (141 - 361)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no318_h07.b1 PHD_FILE: MSMg01no318_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:38 2005CHROMAT_FILE: MSMg01no318_h07.g1 PHD_FILE: MSMg01no318_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATACGCGGAAT
TCAATCCCCGTTTCCCCATAAGATGGGAGGAGAAAACGAACTCCTCTAAA
GTGTCCACACACACACTTTCACCCCCACACACACTCTAAACAAATGTAGT
TAAAAACAAAACAAAACAAAACCTAGCCATCACCTAATACCATATTACCT
GGCATAATCTCCAAAGTTAGGAAAGTGAGTGAGATATGGTTAGTACCTGA
AAGGGACAATTAGTCTAGTCCAATGTCTCCATTCATTCATTCATTCATTC
ATAAGCAAGATCTCACTGTTGCCCCATCAGTCTCAAACTCTAGGGGGTCA
AGAAAACTGCCTGTCTCTATCTCCTGAGCACTTAGCAACGGACGTTAATA
ACTCACTGATAAATATCTCCCCCCCCCCCGGCTATATCATAAAAATTTAC
TTTTTTAAAATCAAGTTCTGCCAGGCGTGATGGCGCACGCCTTTAATCTC
ATCACTCGTCACGCATAGTCAGGCGGATTTCTGAGTTCGAGGCCTGTCTG
TTCTACGTCTTTAATCCCAGCTCTCTTTATTGTGATTGCCGCGTTATTTC
TGACCTCGAGCACATCCTGGTCTACCATGTGAGTTCCAGTACTGCCAGGC
CTACCCTGAGAAACCCTGTCTCGAATAACCCTTTTCCTATAAGAACCTAC
CTTTTCCCTTACCCTCCTATTATAATTAAATTTAACGTTTTCACCATTTT
AACCTTACCTTTATTCTATGCGTATG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCGAAATATCTGCACTAAACCCATCTAGGCCTGGGCTT
TGTTTGGTTGGAAGATTTTAACCACTGCTTCTATTTCTTTAGGGGTTATG
GGACTGTTTAGATGGTTTATCTGATGCTAATTTAAAGGTATTTGGTATCT
GTCTAGAAAATTGTCATTTTCATCCAGATTTTCCAATTGTGTTGAATATA
GGCTTTTGTAGTAGAATTTTTTTAAATTTCCTGTTTCTGTTGTTATAGCT
CCCTTTTCATTTCTGATTTTATTATTTTGGATACTGTCTCTGTACCTCTA
GTTAGTCATACTATTTTTTTATCTATCCCCCTGATTTTGTCAAAGAACCA
GCTCCTGTTTGTTTTGCCATCCCCCCCCACAAAAAAAAAAATATTTTTGA
TGTGTTTCTTCTTTACACTCTTTACATTTCCCTCTCCTTTTTTCTTCCTC
TCGCCTTTCCATTTTTACTGTTTTAATTCTCTCTTATTCTCCTCTTTTCT
TTCTATTTATTATTTTTTTTTTTTTCTCTTTCTTTTATATTACTTTTTTT
TCTACCCTTTCTTTTTTTTTTCTTCTTTTCTCCTCTCCACTCTTTCCCTT
TTTTTTCTCCCTTTCCTTTCTTCTTTCTCTTCTCTCATATTTTATATTTT
TACACCATAATTTTATTTACATTTTACTTCACATATATTTTTAATTCACG
TCTTATCCACTATATTTTATTTATTAATTATATGTTACATTGACATCTTT
TATTCTCTTTCCTTTTCTCTTGATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_h07.b1 MSMg01no318_h07.b1 CHROMAT_FILE:
MSMg01no318_h07.b1 PHD_FILE: MSMg01no318_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:38 2005
         (221 letters)



>mm_chr1_4799571_4800191
          Length = 621

 Score =  408 bits (211), Expect = e-118
 Identities = 217/221 (98%), Gaps = 4/221 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatgtagttaaaaacaaaacaaaacaaaacctagccatcacctaataccatattacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 caaatgtagttaaaaacaaaacaaaacaaaacctagccatcacctaataccatattacct 312

                                                                       
Query: 61  ggcataatctccaaagttaggaaagtgagtgagatatggttagtacctgaaagggacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggcataatctccaaagttaggaaagtgagtgagatatggttagtacctgaaagggacaat 252

                                                                       
Query: 121 tagtctagtccaatgtctccattcattcattcattcattcataagcaagatctcactgtt 180
           |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 251 tagtctagtccaatgtctc----cattcattcattcattcataagcaagatctcactgtt 196

                                                    
Query: 181 gccccatcagtctcaaactctagggggtcaagaaaactgcc 221
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gccccatcagtctcaaactctagggggtcaagaaaactgcc 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)