BAC Information

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BAC

Clone NameMSMg01-319G04
Chromosome1 (Build37)
Map Location 109,303,261 - 109,303,599
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11
Downstream geneSerpinb7, Serpinb2, Serpinb10, Serpinb8, LOC435640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319G04.T7 (MSMg01no319_g04.b1)MSMg01-319G04.TJ (MSMg01no319_g04.g1)
ACCAG438923AG438924
length739758
length of high quality
(start - end)
370 (39 - 408)238 (123 - 360)
definitionCHROMAT_FILE: MSMg01no319_g04.b1 PHD_FILE: MSMg01no319_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:43 2005CHROMAT_FILE: MSMg01no319_g04.g1 PHD_FILE: MSMg01no319_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TAAGTTTCTCCAAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGG
CTGCTCTTCTGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCT
CACAACGACCCGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAGGA
CAGCTACAGTGTACTTACATATGATAAATAAATAAATAAATAAATAAATA
AATAAATAAATAAATAAATCTTAAAAAAAAAAAGAACATACTTCAAGCCA
TGGAAGACACACAAGAACAAGTTTGGCCTGTGTTGCTAAATAGGTCACTG
TGAGAACTGTACTGCAATATGATTGCTGTGAAGTAGCTTTCCCGAGTTAT
GAAAGCAGATTCCCCCCACCCCGCCACTCACAGCCCTTGTGCTAAGTTGA
GGGTTATCTCTAGAGTGAAACTTAAGCAATCTTCAGTGGAAAGGAAATGA
TTTCTCCCAGGATATGGATTCTGAGCAGTGTTGGCTAGCACAGTATGCTC
GGATGACGGGGTTTTATTTGTTGCTTTTTTAAATTATTATTTTAATTTTA
ATTTTTATTTTTTAGAACCTTAAATATTTTTCTATTTAAATAATAATACA
AAATTAGATAGAACTTAGATTTTCTTTGAAGTATGAAGGAAACTTGAAGT
CTGCTAGCTTTCTCATGCTACCTCATCTATGAAGACAGA
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCAGAAAATTCAGTCAGAATGTTACCTATTCAGTAACATTCA
AATTCACTTCTATTATACCCCGTGAAACTAGTTAGGCAGTACAATTTACT
TGAAACAGAACTAGAAAAGCTCAGGGGTAGTTTACGTAGTAATTATTTAG
GACAATAGCTGAGTCACACCCAAACACAGGAATACACATTGGCCTAGGAT
ATAGGTGGGTTTGTTGCAGGTTTCTTCACTAGGCCCAGAAGAATAACAAA
ATCAGGTATTTACTAATAATCCTTGGTGGTGGGTTTAACAATAGACTAGC
ATTGCATCTTTGTTTTCACCTGCCTCCCCTCTAAGGGGTAAACAGGGCCT
GGCTCCCATTATCCCCCCCCCCCAACATTACAATTTGTTTTGTGTCAAGG
TAACTTAGCATATGTGTTCCCTGGATTTTCTTGTTTTTCTTCTGTATTAA
AACGCTGGTGTTCCTTTGGACAAAACACTTTCCGAGTCCGATCTCTCTCT
TTTTTTTCGACTTTTCGGTCGGGGGTTATCTGATCTTCCTATCCCCTCTA
TTACCCCCTTTATCCAATATTTTTCGCCTCTCCCTCCCCCTCGTTATTCG
CTTTTTCCCCTTACCTATCCTCTTTCGTTTGCTCTTTGTTGCATTTTCTC
ATTTTCGATTATGCGCTCGATTCTGCTTCTTATTTATCGGGCCCGCATTT
TTTCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_g04.b1 MSMg01no319_g04.b1 CHROMAT_FILE:
MSMg01no319_g04.b1 PHD_FILE: MSMg01no319_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:43 2005
         (370 letters)



>mm_chr1_109303030_109303799
          Length = 770

 Score =  574 bits (297), Expect = e-168
 Identities = 336/367 (91%), Gaps = 29/367 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccataagtttctccaagggctggtgagatggctcagtgggtaagagcacccggct 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gaattccataagttacttcaagggctggtgagatggctcagtgggtaagagcacccggct 291

                                                                       
Query: 65  gctcttctgaaggtccaaagttcaaatcccagcaaccacatggtggctcacaacgacccg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gctcttctgaaggtccaaagttcaaatcccagcaaccacatggtggctcacaacgacccg 351

                                                                       
Query: 125 taatgagatctgatgccctcttctggtgtgtctgaggacagctacagtgtacttacatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 taatgagatctgatgccctcttctggtgtgtctgaggacagctacagtgtacttacatat 411

                                                                       
Query: 185 gataaataaataaataaataaataaataaataaataaataaataaatcttaaaaaaaaaa 244
           |||||||||||||||||||                            |||||||||||||
Sbjct: 412 gataaataaataaataaat----------------------------cttaaaaaaaaaa 443

                                                                       
Query: 245 a-gaacatacttcaagccatggaagacacacaagaacaagtttggcctgtgttgctaaat 303
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagaacatacttcaagccatggaagacacacaagaacaagtttggcctgtgttgctaaat 503

                                                                       
Query: 304 aggtcactgtgagaactgtactgcaatatgattgctgtgaagtagctttcccgagttatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggtcactgtgagaactgtactgcaatatgattgctgtgaagtagctttcccgagttatg 563

                  
Query: 364 aaagcag 370
           |||||||
Sbjct: 564 aaagcag 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)