BAC Information

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BAC

Clone NameMSMg01-319I16
Chromosome1 (Build37)
Map Location 35,909,601 - 35,909,891
singlet/doubletsinglet
Overlap genenone
Upstream genePlekhb2, LOC666261, LOC100041544
Downstream geneLOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319I16.T7 (MSMg01no319_i16.b1)MSMg01-319I16.TJ (MSMg01no319_i16.g1)
ACCAG439038
length733738
length of high quality
(start - end)
---291 (70 - 360)
definitionCHROMAT_FILE: MSMg01no319_i16.b1 PHD_FILE: MSMg01no319_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:54 2005CHROMAT_FILE: MSMg01no319_i16.g1 PHD_FILE: MSMg01no319_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGAGATTCCTTCTTCTTTTCTGAACACATG
GGTGTTGCAAACTGTATCCCCATGATGACTCGGTTACCTTTGCATGAGTA
GGATTCACTGTTTCATTGATGGTATCCCCTTTACCCCAAGAACAGTGGAA
CAAAGTGCCATGTCCAAAGTCATGAGGTAAGGAAGAGCCAAAACCTGCAC
AAAGTCAGGGCTCATCCTAGAACCCAGGATCCTCATCCCAGACACACAGC
CTGGAATGCTGTGACTCTTTGTCACCCTAGCCAGGAATCTTGTCAAAGTC
ACACTGTCAGTTCTATAAAAATTAACACCCAAAACTAAACCCCTCAGAAA
TATGCCAAGTTTTCCCCCCCACCCACTTCCTAGATCTTGTCCTAGTAGTT
GGATGGGTGAAAAGCCCTTTGTAATTTTCTGTAAGAAATAAATGTCTGTT
GTAGAAAGATAAGGGAATTCTGGCACACGCAGTGGTGCCTTCTGATCTAG
CTCCTATAAAAATAGTATGTTTATTCTTGCCCTTGGAGTGAGTATAATAT
CTGGCTCCAATCAGCAACCTGGTTAANACTGGCCCGCCAAACTCCAACTT
AGTCAGCAGTGTCAGGACCAGTGTGTCTGGAAAGAGTTTTGGATACTGGG
ACCCTTATGGCCTCCGTGGGGAATTACCCTGTTATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_i16.g1 MSMg01no319_i16.g1 CHROMAT_FILE:
MSMg01no319_i16.g1 PHD_FILE: MSMg01no319_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:54 2005
         (291 letters)



>mm_chr1_35909401_35910091
          Length = 691

 Score =  464 bits (240), Expect = e-135
 Identities = 279/292 (95%), Gaps = 2/292 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagattccttcttcttttctgaacacatgggtgtt-gcaaactgtatccccatgatga 59
           |||||||||||||||||||||||||||||||||| || || ||||||||||||| |||||
Sbjct: 201 cagagattccttcttcttttctgaacacatgggt-ttcgcgaactgtatccccacgatga 259

                                                                       
Query: 60  ctcggttacctttgcatgagtaggattcactgtttcattgatggtatcccctttacccca 119
           | ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 260 cccggttacctttgcatgagtagaattcactgtttcattgatggcatcccctttacccca 319

                                                                       
Query: 120 agaacagtggaacaaagtgccatgtccaaagtcatgaggtaaggaagagccaaaacctgc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaacagtggaacaaagtgccatgtccaaagtcatgaggtaaggaagagccaaaacctgc 379

                                                                       
Query: 180 acaaagtcagggctcatcctagaacccaggatcctcatcccagacacacagcctggaatg 239
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 380 acaaagtcagggctcatcctagaacccaggatcctcaccccagacacacagcctggaatg 439

                                                               
Query: 240 ctgtgactctttgtcaccctagccaggaatcttgtcaaagtcacactgtcag 291
           ||||||| |   | ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgtgacccaaggccaccctagccaggaatcttgtcaaagtcacactgtcag 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)