Query= MSMg01no319_n06.b1 MSMg01no319_n06.b1 CHROMAT_FILE:
MSMg01no319_n06.b1 PHD_FILE: MSMg01no319_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:13 2005
(361 letters)
>mm_chr1_31792206_31792967
Length = 762
Score = 551 bits (285), Expect = e-161
Identities = 339/359 (94%), Gaps = 11/359 (3%)
Strand = Plus / Plus
Query: 5 gaattcactttaggttggctgctagggatatagtatactttgaggagtggtttgtttacc 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcactttatgttggctgctagggatatagtatactttgaggagtggtttgtttacc 267
Query: 65 gagtgagcgatactaccttagaaaaaaaaaacctaaattttcaattgcagttggctgtta 124
||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 268 gagtgagtgatactaccttagaaaaaaaca--ctaaattttcaattgcagttggctgtta 325
Query: 125 tttggagatagcttctactctaacaatttgaatacttgtgtcttctaggtttcagattcc 184
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttggagataact-ctactctaacaatttgaatacttgtgtcttctaggtttcagattcc 384
Query: 185 atggagagataaactgatttttgtttgaataaagtgagatagccaggtggaaagaggtgt 244
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct: 385 atggagagataaactgatttttgtttgaataaagttagatagccaggtgaaaagaggttt 444
Query: 245 cacaaaccacaaaaa-tg-tccctacct-ttactctcaaggaagagattgctgtaaaaat 301
||||||||||||||| || ||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 445 cacaaaccacaaaaaatgatcc-tac-tgttactctcaaggaagagattgctgtaaaaat 502
Query: 302 aagtaaaaagtgtgtgtccaacatgggttaccaatagaatagaggaggaggagaaagag 360
| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 503 atgtaaaaagtgtgtgtccaacacgggttaccaatagaatagaggaggag---aaagag 558
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 762
Length adjustment: 9
Effective length of query: 352
Effective length of database: 753
Effective search space: 265056
Effective search space used: 265056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no319_n06.g1 MSMg01no319_n06.g1 CHROMAT_FILE:
MSMg01no319_n06.g1 PHD_FILE: MSMg01no319_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:13 2005
(341 letters)
>mm_chr1_31850335_31851075
Length = 741
Score = 640 bits (331), Expect = 0.0
Identities = 341/349 (97%), Gaps = 8/349 (2%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacacagaaaaaccctgtctcaaaaaataaaaaacaaaacaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 caggacagccagggctacacagaaaaaccctgtctcaaaaaataaaaaacaaaacaaaac 370
Query: 61 aaatcacagataaaggaagacaagagtaaatattttgctttttcttgtttctcacaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaatcacagataaaggaagacaagagtaaatattttgctttttcttgtttctcacaaaac 310
Query: 121 attatgaagtaaataatattaaaataatgctcagaaaactccagcagatagtattcttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 attatgaagtaaataatattaaaataatgctcagaaaactccagcagatagtattcttca 250
Query: 181 agcatacaca--------cacacacacacacacaaatatatacatacatgcatacatact 232
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agcatacacatacacacacacacacacacacacaaatatatacatacatgcatacatact 190
Query: 233 atcaacaataattagaataattcatgccactttattgaaatttaatatttatgtatcata 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 atcaacaataattagaataattcatgccactttattgaaatttaatatttatgtatcata 130
Query: 293 tatacatatatatgcatgcaaattagaatataacctatagattgcatag 341
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tatacatatatatgcatgcaaattagaatataacctatagattgcatag 81
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
