BAC Information

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BAC

Clone NameMSMg01-319O19
Chromosome1 (Build37)
Map Location 38,852,343 - 38,852,572
singlet/doubletsinglet
Overlap geneLonrf2
Upstream geneTsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
Downstream geneChst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319O19.T7 (MSMg01no319_o19.b1)MSMg01-319O19.TJ (MSMg01no319_o19.g1)
ACCAG439302AG439303
length743737
length of high quality
(start - end)
269 (433 - 701)231 (423 - 653)
definitionCHROMAT_FILE: MSMg01no319_o19.b1 PHD_FILE: MSMg01no319_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:20 2005CHROMAT_FILE: MSMg01no319_o19.g1 PHD_FILE: MSMg01no319_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTCCT
AGTGAATAGCTCATAACGAGTATTTAAAGAAAAGAACAAACACACACGAG
ACGTGGAAAGATGTATCCCTCCAAGAAATATACAAAATATAACAAAGAAG
AGCTGAGAAACAATGAACCAAGCCCAACATAGCAAACCAGGAAAGCCCAA
AAATTGACGAGAGAAAAATATAACCAGATCATCAGTAAACAAAAACCCAA
GAAAGATCCTTTAAATGCAAATAGCCTTAACTCAGCAATAAGAAGACAGA
GACTGGCTGAACTAAAAACCAAAGCCCAACTGCTTTCTCTAAGAAGAATG
CTAGCTAACAAAGACTACCCAAGACTTAGTGTCAAAGTATACCTTACTAA
GTAACCAAAAACCACACCCCACCACACATAACGCTTATTCTGTCTGATAA
AGTAGACTTAAGTTAAAATTGCTTAGAAGAGGTAACTACGATTCATCAAG
AAGACATGACAACTGTAAATATTTGTGTACCCAGTATCAGGATTTCCTAT
CCCTTAAACACTGAGATGTGTAAAAGGTCACATTGGTCTTGACTCAGAAA
AAGTGGGGAACTTCAGTACTCACTCTTATAACTAGATAGCTCCCCCAAGC
TAAAACTCAACAATGACACTTTAGAGATAAATTGTGCCACAAACCAAACT
GGATTTAAAAGATTGCCACAGAACATTTCATCTAAGAAACCTA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGTCTCACCCAAGAGAATCAGAAACTATTT
GAGTTTTCTCTGTTTTATCCCAAAAGGTAAGCATCCTTTTGGATTCTGCG
GGATACGACAGGTTCAAGTCTGTTAACAGCCCCACTCTTGTAGGAACTCA
CTATGAACCTTGGCCTTGAAAGTAAGGGTGAGGAGCTTTGGGCCAGATGA
AGCTGACTATGTAATCAACCCCAGCTATTCAACTTCCAAATTACACTAGG
CATAACCACCAGGAAACAGAAGCTGTTAGGCAGTATGGGAGTGGAGAGCA
GAGGACCACTGTGTACTGTGCACTTGGCCTTAAGGGATGTCCTCATTAGA
AGCAGGAGCAGCCACCCACCCCCACTGTCAACTGATAGGGAGGGGCCTCT
TCTACCTCAGCTTTAGGGAATGGGTTTTTCTTCTATGCTTTGCAGTCTGT
GGAAACCCTGCCTGCTGCGTTCCAGTCAAACATAGCATCTTTGGAGATCC
TTTGTCTCCTTCTAATCTCCATACAAACTACGGAAATGTACTAAACCCTG
CTACTCCTAAGCATGGTTGGGGAAGGCGGGGGAGTTACTGCTTAAGCCCA
GCATGTGCTCCGCTGACCTGGTCTGCTGACTTACAGAGTTTCTTTCTTCC
TAGAGGGCATACTTGCTCAGATCGAGTTGTTGCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_o19.g1 MSMg01no319_o19.g1 CHROMAT_FILE:
MSMg01no319_o19.g1 PHD_FILE: MSMg01no319_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:20 2005
         (231 letters)



>mm_chr1_38852142_38852772
          Length = 631

 Score =  414 bits (214), Expect = e-120
 Identities = 226/230 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   actgtcaactgatagggaggggcctcttctacctcagctttagggaatgggtttttcttc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 actgtcaactgatagggaggggcctcttctacctcagctttagggaatgggtttttcttc 261

                                                                       
Query: 62  tatgctttgcagtctgtggaaaccctgcctgctgcgttccagtcaaacatagcatctttg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatgctttgcagtctgtggaaaccctgcctgctgcgttccagtcaaacatagcatctttg 321

                                                                       
Query: 122 gagatcctttgtctccttctaatctccatacaaactacggaaatgtactaaaccctgcta 181
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaaatcctttgtctccttctaatctccatacaaactacggaaatgtactaaaccctgcta 381

                                                             
Query: 182 ctcctaagcatggttggggaaggcgggggagttactgcttaagcccagca 231
           ||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 382 ctcctaaccgtggttggggaaggtgggggagttactgcttaagcccagca 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)