Query= MSMg01no320_b19.b1 MSMg01no320_b19.b1 CHROMAT_FILE:
MSMg01no320_b19.b1 PHD_FILE: MSMg01no320_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:33 2005
(568 letters)
>mm_chr1_64135937_64136908
Length = 972
Score = 980 bits (507), Expect = 0.0
Identities = 551/573 (96%), Gaps = 14/573 (2%)
Strand = Plus / Plus
Query: 1 aaaaacacaagaggcaggctggttgtctgtgttcaaatttcttaccttg-ttccactgta 59
||||||| |||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct: 209 aaaaacataagaggcaggctggttgtctgtgttcaaatttcttaccaggctttaactgta 268
Query: 60 agtaccatgtctgcttcagagcttcaggggataagtttacgtgtttacagtatagagcaa 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agtac---------ttcagagcttcaggggataagtttacgtgtttacagtatagagcaa 319
Query: 120 atctcatactctaagctgagaggaaggtttatttcatggagtagaggaagttttgcttcc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atctcatactctaagctgagaggaaggtttatttcatggagtagaggaagttttgcttcc 379
Query: 180 tggagtggaaggaaaatccatttctttgacccacagaggccatctcccttggccatctcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggagtggaaggaaaatccatttctttgacccacagaggccatctcccttggccatctcc 439
Query: 240 tctttctttctcttgcttctaaaaaacaccaaggacagcagagtggacaaatggacacca 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 440 tctttctttctcttgcttctaaaaaacaccaaggatagcagagtggacaaatggacacca 499
Query: 300 tgctcttcttgtctccctcccaccccccagcctctggatctggtccattatttacttcct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgctcttcttgtctccctcccaccccccagcctctggatctggtccattatttacttcct 559
Query: 360 ctgcctctctcctcagtgttccccacacaggggttcccttgcttctctacaaaaccacgt 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 560 ctgcctctctcctcagtgttccccacacaggggttcccttgcttctctacaaaaccacat 619
Query: 420 gttcaacggctcccattcaagcttctgctgtaattcaccaatggcctgccatccatcccc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gttcaacggctcccattcaagcttctgctgtaattcaccaatggcctgccatccatcccc 679
Query: 480 tactgctttactcaggcccctgctgacctgtctttct----gtctctctttcattcatta 535
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 680 tactactttactcaggcccctgctgacctgtctttctctctgtctctctttcattcatta 739
Query: 536 cattccttaggcagacaacattctaagaccaag 568
|||||||||||||||||||||||||||||||||
Sbjct: 740 cattccttaggcagacaacattctaagaccaag 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 972
Length adjustment: 10
Effective length of query: 558
Effective length of database: 962
Effective search space: 536796
Effective search space used: 536796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no320_b19.g1 MSMg01no320_b19.g1 CHROMAT_FILE:
MSMg01no320_b19.g1 PHD_FILE: MSMg01no320_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:33 2005
(288 letters)
>mm_chr1_64333787_64334474
Length = 688
Score = 553 bits (286), Expect = e-162
Identities = 286/286 (100%)
Strand = Plus / Minus
Query: 1 aggttgcctcttgcttgggaatggaggtagagaaattttcttataggctatcaataagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aggttgcctcttgcttgggaatggaggtagagaaattttcttataggctatcaataagat 427
Query: 61 gcctgaagatggtagtactttgtatacagggagtaagcagatttttaaatatgcacagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gcctgaagatggtagtactttgtatacagggagtaagcagatttttaaatatgcacagcc 367
Query: 121 agaaactactttgcagaaaatgtcttcaaatcctatacttcatctttgtgaggaaaagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agaaactactttgcagaaaatgtcttcaaatcctatacttcatctttgtgaggaaaagct 307
Query: 181 tggtccatgtcttctctgatttgatagctatcctagaagcttcccaggcaatgcctctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tggtccatgtcttctctgatttgatagctatcctagaagcttcccaggcaatgcctctaa 247
Query: 241 tgggttctgagattgaagaaagccctttctgaactgtagataatga 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tgggttctgagattgaagaaagccctttctgaactgtagataatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
