BAC Information

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BAC

Clone NameMSMg01-320I01
Chromosome1 (Build37)
Map Location 166,778,306 - 166,778,648
singlet/doubletsinglet
Overlap genenone
Upstream geneKifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt
Downstream geneXcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320I01.T7 (MSMg01no320_i01.b1)MSMg01-320I01.TJ (MSMg01no320_i01.g1)
ACCAG439718AG439719
length722723
length of high quality
(start - end)		678 (45 - 722)647 (77 - 723)
definitionCHROMAT_FILE: MSMg01no320_i01.b1 PHD_FILE: MSMg01no320_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:01 2005CHROMAT_FILE: MSMg01no320_i01.g1 PHD_FILE: MSMg01no320_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCCTTATATATGATGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCATGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATC
CATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCTCAT
TCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGAGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGCTC
TGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTA
TCCTTGAGAAGAGTTTTTGCTA

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTACATTCAAAGTGAAGTGTA
CCCAGAGTGTCATCTATATGTGACTTACGTGATCTAGGTGGTTAGAGTGA
GGGCTTTTGAGAGGTTATTTGGAAAAAATTTTGTATTTAGATTTGTAGAG
GATTAAAAAGTTTGGGGATTGCACTGGCTAGTTTGGCATTAACTTGATAC
AAACTGGAGTCATCTAAAAGGAGGAAACCTCAATTGAGAAAATGCCTCTG
TAAGATCCATCTGTAGGGCATTTTCTTAATTAGTGATCAACTGAGGAGGG
TCCAGCCCTTTGGGAGTCATCCTTAGGCTGGGGTCCTGGGCTCTATAAAA
AAGCAGGCTGAGTAAGCCATGATAGACAAGCTTGAAAGCAGCACTTCTCC
ATGGCCTCTGCATCAGCTCCTGACTTCTGGTTCCTGTCCTGACTTCTTTC
AGTGGTAGACTCTGATATGGAAATGAAAGCCAAATAATCTTTCCCTCCTC
ACTTTGCTTTTGGTCACGGTGTTTCATCACAGCAATAAACCCTTGCTAAG
ACAGGGATGGTGTGATAGAGAGAATACATTTTTCATGGGGACAGATATGA
GTTAGGAGGTAAGAGGACAAAATATAGTGGGTTGACCAGTGACCACTCAG
AACAAACATTGTTCCTCTGTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_i01.g1 MSMg01no320_i01.g1 CHROMAT_FILE:
MSMg01no320_i01.g1 PHD_FILE: MSMg01no320_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:01 2005
         (647 letters)



>mm_chr1_166778306_166779352
          Length = 1047

 Score =  648 bits (335), Expect = 0.0
 Identities = 341/343 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctacattcaaagtgaagtgtacccagagtgtcatctatatgtgacttacgtgatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 343 tccctacattcaaagtgaagtgtacccagagtgtcatctatatgtgacttaggtgatcta 284

                                                                       
Query: 61  ggtggttagagtgagggcttttgagaggttatttggaaaaaattttgtatttagatttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ggtggttagagtgagggcttttgagaggttatttggaaaaaattttgtatttagatttgt 224

                                                                       
Query: 121 agaggattaaaaagtttggggattgcactggctagtttggcattaacttgatacaaactg 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 agagtattaaaaagtttggggattgcactggctagtttggcattaacttgatacaaactg 164

                                                                       
Query: 181 gagtcatctaaaaggaggaaacctcaattgagaaaatgcctctgtaagatccatctgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gagtcatctaaaaggaggaaacctcaattgagaaaatgcctctgtaagatccatctgtag 104

                                                                       
Query: 241 ggcattttcttaattagtgatcaactgaggagggtccagccctttgggagtcatccttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ggcattttcttaattagtgatcaactgaggagggtccagccctttgggagtcatccttag 44

                                                      
Query: 301 gctggggtcctgggctctataaaaaagcaggctgagtaagcca 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  gctggggtcctgggctctataaaaaagcaggctgagtaagcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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