BAC Information

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BAC

Clone NameMSMg01-320J08
Chromosome1 (Build37)
Map Location 107,888,540 - 108,089,072
singlet/doubletdoublet
Overlap geneZcchc2, EG435634, Phlpp
Upstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504
Downstream geneLOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320J08.T7 (MSMg01no320_j08.b1)MSMg01-320J08.TJ (MSMg01no320_j08.g1)
ACCAG439778AG439779
length743731
length of high quality
(start - end)
232 (130 - 361)234 (103 - 336)
definitionCHROMAT_FILE: MSMg01no320_j08.b1 PHD_FILE: MSMg01no320_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:07 2005CHROMAT_FILE: MSMg01no320_j08.g1 PHD_FILE: MSMg01no320_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,088,843 - 108,089,072)(107,888,540 - 107,888,773)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATGCTTATAATTAAGGAAAATCACATGTTCATTAGTTTCTTGCC
AGTATTTATTATTTATTATCCCTTAACTGTGCACTATATCATCTGGTTTG
CATACACGGCACACATATACATATATACTTAAATTTTATCATGGTCTTAT
ACTAACTTTGTAAACAGATTTAAACTCTAAATCACTTTATTAATCTAAAA
ATGAAAAATAATATTCACCAAACAGTTCTTATCTTCAAATATAATCAAGT
CATAGGAAAAAGGAAAAAAAGCCAAAATTTTCTCAAAAGTAATCCAGAAG
TGATTTTACTTATAATTAACCACCCCCCCACACGCATAATCCCAGTCTCT
CATTTACTACATGACAGAAAGCGTCTAAACACACTGCTGCCTCCTCTCCA
TCTCCGCCTCTCCTGCACACACTCTTAGAGTGAGGAGAGAATCAGAAACT
GCTATCAAGACAACCTGCCCAATGCAAACCGAGCCAAATCTACAAGACCA
TGCCTGGCAATCTGTTCCTAATCTCCTCTTTATCCTCACCCTCTTTCCAG
TGCACTGTGACACACACACCGAGCCCCAGAACGCTCGCCCTTTANAAAAT
TCAGCACCAGTTGAAAACAGTCAAAAAGTCTCCAATTTAAGGGTAGAATG
ATCAGCTGATTGGCTGACTTAAGAAAAGTACACTACAACAAAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTTCTGATGTGCACGAGTTATCACGGAAGACTGGAGCTCCCTG
CACCCTAGACCTCAGAATTAGGAGGCTCGTGGGACATTTTGGGCTCGAGT
ATTTGGGTGCTAGGTGCAAGGGAAAAAGCCAAGCGCTTGGGGCTGTCAAC
CACCGTCCGTTTAGCCCTGGGTGGGCTGTTTCCTAGTCTCAGCCTGTTTA
AAAACCGCCTTACCCCTTGGCACTGCCAGGTTACTGTGGCATAAGGAACT
TTTTATACTTAGTGTGTGCTAATTAAGGTTTTGAATTGGTTTTTGGCTCT
TACTNGGCCAACTTTGTATTCACTGGGAGTGTGTGTGTGTGTGTGTTCAA
AAAAATAAACTGTGGAGACCTATGAATTGGCTGACCTAAGTACAAAAATC
GGTCATCTAGGTAAAGACTTGGGATGGCCTGGCTAAACCTTTAACAGACT
ACCAAACAAGCTTTCCTAAGGGGCTTGATTTCTACTTCAGATTTGGGGTC
TGGTGATCTCTTAGGTCTTTAGGCATTAACGTTGTCTGAAAGAGTTATTA
AAACACATTTAGTACATAGGAATCCACTTATCGAATACTTTAAAGAATTT
TTACAGTCTTGGAAGTAATTTAATTAGGCCCAATAAACCACTTAAGAATG
GCGATTTTATGCGGGATATGTTTCAACTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_j08.b1 MSMg01no320_j08.b1 CHROMAT_FILE:
MSMg01no320_j08.b1 PHD_FILE: MSMg01no320_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:07 2005
         (232 letters)



>mm_chr1_108088643_108089274
          Length = 632

 Score =  437 bits (226), Expect = e-127
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcactatatcatctggtttgcatacacggcacacatatacatatatacttaaattttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgcactatatcatctggtttgcatacacggcacacatatacatatatacttaaattttat 371

                                                                       
Query: 61  catggtcttatactaactttgtaaacagatttaaactctaaatcactttattaatctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 catggtcttatactaactttgtaaacagatttaaactctaaatcactttattaatctaaa 311

                                                                       
Query: 121 aatgaaaaataatattcaccaaacagttcttatcttcaaatataatcaagtcataggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 310 aatgaaaaataatattcaccaaacagttcttatcttcaaatataatcaagtcatagggaa 251

                                                             
Query: 181 aaggaaaaaaagccaaaattttctcaaaagtaatccagaagtgattttac 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaggaaaaaaagccaaaattttctcaaaagtaatccagaagtgattttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no320_j08.g1 MSMg01no320_j08.g1 CHROMAT_FILE:
MSMg01no320_j08.g1 PHD_FILE: MSMg01no320_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:07 2005
         (234 letters)



>mm_chr1_107888340_107888973
          Length = 634

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctagacctcagaattaggaggctcgtgggacattttgggctcgagtatttgggtgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctagacctcagaattaggaggctcgtgggacattttgggctcgagtatttgggtgcta 260

                                                                       
Query: 61  ggtgcaagggaaaaagccaagcgcttggggctgtcaaccaccgtccgtttagccctgggt 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgcaaggggaaaagccaagcgcttggggctgtcaaccaccgtccgtttagccctgggt 320

                                                                       
Query: 121 gggctgtttcctagtctcagcctgtttaaaaaccgccttaccccttggcactgccaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggctgtttcctagtctcagcctgtttaaaaaccgccttaccccttggcactgccaggtt 380

                                                                 
Query: 181 actgtggcataaggaactttttatacttagtgtgtgctaattaaggttttgaat 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtggcataaggaactttttatacttagtgtgtgctaattaaggttttgaat 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)