BAC Information

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BAC

Clone NameMSMg01-320K01
Chromosome1 (Build37)
Map Location 49,370,599 - 49,370,875
singlet/doubletsinglet
Overlap geneC230029F24Rik
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924
Downstream geneLOC627430, LOC100041981, EG666962, EG666970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320K01.T7 (MSMg01no320_k01.b1)MSMg01-320K01.TJ (MSMg01no320_k01.g1)
ACCAG439811AG439812
length968783
length of high quality
(start - end)
---278 (74 - 351)
definitionCHROMAT_FILE: MSMg01no320_k01.b1 PHD_FILE: MSMg01no320_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:10 2005CHROMAT_FILE: MSMg01no320_k01.g1 PHD_FILE: MSMg01no320_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGGGGAGAGGGGANAGGGAGAANCCCACCTATGCCGGGGGGGCCTTTA
AAAATTGCGGGCGCTAGAACGGAGGGNNANGGGATACGGGACTCGCNNGN
GNNNNNNNNNNNNNATTGCCAAAAAAAAGAGGGNNNNNNNGNNGNNNGNN
NNNNNNNNNNNNNNNNGNGGNGGGTTTTTNTGCTGTAAGGAAAGGAGGAG
TNNATAGGANNTTAGGGATTATAGGGTGNNTAGATGTGGGATAAGTATGG
GAGAATGTGTAATGTTGGAGGAGGGTGGGGAGGGNGTTNGGGAGGTNTGA
GGATGTGGGGGGAGAGTTTGGGGGGAAGTTTGTTTTTTTAGGGTNAAGGG
GANNGAGGAGGGGAAAAGGAGGGGTGGGGAGAGGTAATAANGTGGGGAGT
GGAAAGGAGGGGNGGNGAGGGGTTTGTTTAATAGTTTTANNGGGGGAGAG
AGGGGGGGGGGGAAGAAAGGGANGGGGGGAGAGAGTTGTATTTTTTTATG
GAGGGGAGAGGGGGGGGGGGGAGAAGGGAAAGAAAGGGGGGGAAGAGGGG
GAAGAGAGGGGGGGGAGAAGGGGGGATAAATAGAGGGGNTGAAGGAGAGG
GGGGAGGAGGGAGGGGGGGGGAAAAGAGAAGAGAAGAGAGAGAGAAAAGG
GTGGGGGTGGGGAGAGAGAAAAAGAGAGGGGAGGGGGANNGTGAGNANNN
NNNAANNNNNNNNNNNNTAGAGGAGAAAAGGAGGNNNNNGAGAGGGGNGA
GGTGNNNNTTNNGAAAGAAAAAAAAAANTAAGAAAAATAAAGAATGAGAG
GGGGGGAGGGGGAGAAGGAGGGGGAGGAGGGGGGAGAGAGAAAAAGAAGG
GGGGAATGAGGGGGGAGGGGGAGGGGGGAAGAGGGGGAGGGATGGATAGG
GGTGAATATAAAGGGGNGAATAAAAGGGTGAGGGTAGAAAAAAAAGGGAG
GGGAGAGAAGGAGGGGGG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCTTGCCAAAAACAATACCTTAAGGTATACTAGATATTCTT
TGCTCTCTGAGGTTTTATTTTTCCCCTTGTAAATTTTAAAACATGACAAT
ATTGCTTAACCTGACTAAACTACATTGCAACATTTGTATCAGAGAAGTTG
GTCTCTGTAAGTTCCTACATGTTTCATTAATGTACCCACATATATGTTTC
TGTTGAAAGAATTTGTGTGAATACATAAGATCAAAATCATAGTTTTTCTC
ACTTTTGAAAATTAAGATTGCTGTGTTTGCCTTGTGCGTGTGTGTGTGTG
TGTGTGTGTGCGCGCGTTTGTGTGCACACCCGCGATTCTCTGCGTGTGCC
CTATAAGTGCTGCATTTATCATTGCATATTCGCTATCATCTGCTACCATA
TGATTATGATCTGCTAATTCATGATTTACCTTCTCACTTGCCAAATGTTC
ATTAACCTGTGTGTCGAACATCACTGCCCTTTTATATGTTGACTTGCATT
CTGAAGAATGCATACTTTATACAAATACCCTTCTCTCTCTACTCTCATTC
TCTTATCTCACTCCTCTCTACTCTCCATAGAGTAAAGTTAAGTGTGTTTT
GTCCTGCGCTCATCGACACTATAATATATGCGTTACACCGCTGTTATTTA
ACATGTATAAAACGGTTCCGGTCACTATAATTTTTATCACCGCTCTTAAC
CATACTTCCCTTCATTAATTTTATATTAATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_k01.g1 MSMg01no320_k01.g1 CHROMAT_FILE:
MSMg01no320_k01.g1 PHD_FILE: MSMg01no320_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:10 2005
         (278 letters)



>mm_chr1_49370399_49371075
          Length = 677

 Score =  478 bits (247), Expect = e-139
 Identities = 270/281 (96%), Gaps = 7/281 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataccttaaggtatactagatattctttgctctctgaggttttatttt---tccccttgt 57
           |||||||||||||||||||| |||||||||||||||||||||||||||   |    ||||
Sbjct: 477 ataccttaaggtatactagacattctttgctctctgaggttttattttttat----ttgt 422

                                                                       
Query: 58  aaattttaaaacatgacaatattgcttaacctgactaaactacattgcaacatttgtatc 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaattttaaaacatgacaatattgcttaacctgactaaactacattgcaacatttgtatc 362

                                                                       
Query: 118 agagaagttggtctctgtaagttcctacatgtttcattaatgtacccacatatatgtttc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agagaagttggtctctgtaagttcctacatgtttcattaatgtacccacatatatgtttc 302

                                                                       
Query: 178 tgttgaaagaatttgtgtgaatacataagatcaaaatcatagtttttctcacttttgaaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgttgaaagaatttgtgtgaatacataagatcaaaatcatagtttttctcacttttgaaa 242

                                                    
Query: 238 attaagattgctgtgtttgccttgtgcgtgtgtgtgtgtgt 278
           ||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 241 attaagattgctgtgatggccttgtgtgtgtgtgtgtgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 677
Length adjustment: 9
Effective length of query: 269
Effective length of database: 668
Effective search space:   179692
Effective search space used:   179692
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)