BAC Information

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BAC

Clone NameMSMg01-320M20
Chromosome1 (Build37)
Map Location 184,589,512 - 184,589,757
singlet/doubletsinglet
Overlap genenone
Upstream geneA230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8
Downstream gene4922505E12Rik, Susd4, Tlr5, EG666649
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320M20.T7 (MSMg01no320_m20.b1)MSMg01-320M20.TJ (MSMg01no320_m20.g1)
ACCAG439944AG439945
length681691
length of high quality
(start - end)
234 (97 - 330)234 (106 - 339)
definitionCHROMAT_FILE: MSMg01no320_m20.b1 PHD_FILE: MSMg01no320_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:24 2005CHROMAT_FILE: MSMg01no320_m20.g1 PHD_FILE: MSMg01no320_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCAAGCAGCACCATATC
CGTGATTTACAGCTCAGTCTTATTGTACAAGAAGAGACTCCCACCCAACA
GTGTGTAAGGCAAATTACAGTTCTCCGGAGCTTTCCTCAAATATTTCTGA
GGTAGTCTCCTGGCATTCATAATTGGTGTTCAACTAACGATTGTTCCTAA
CACGTTGGAATTTCTGTTTTGACAAGTGGTAAGTGGTAAATATCTAGAGA
TTTCTACCATTAACTTAGTGTGTGAGCCAGGTATCTTTTAACCACTATTC
ATTGGATTGTTCTAGTAATTTAAGATTTGTTATATAGGACTTTCTCTCAC
AGATTTATTTATTTATTACATGTAAGTACACTGTAGCTGTCTTCAGAAGA
GGGCGTCATATCTCGTTACAGATGGTTGCGAGCCACCATGTGGTTGCTGG
GATTTGAACTCTGGACTTTCGGAAGAGCAGTCGGGTGCTCCTACCCACTG
AGCCATCTCACCAGCCCGGTAAATAGGACTTCTAAAGTCCTATTTAAATA
GGACTTTTGCCTGTGGTCCTGCCTGAATATCAGGGCCTTCAATCACCTCT
ATTATTCTCAAAGACTAACTTGGGGGCAGAACTCGGATTCTCTCATCTCT
TCGTCATCCCAGGCATGTGCTGTTGACCTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCATGTATTCCAGCTTTTGTTGTGCAAATCTTGCTCCTTTA
TTCCCAATTATTGGTTGAATAAACATGCCTACAGCCTATAACTGGGCAGA
AGAGAAGTAGACAGGGCTTCCTTCTTGGGCTTAGGGTTGGAGGCAGAGAC
CAGGACAGAGAGGAGAAAGAAAAAGGGTCCATGGGGCAGGTGGATCATGA
GTGCATGGCCATGAGGGCTGGTCTGTTGGAGTAGGAGCTACCCAGGCAGA
ACACAGCAAGTGATGTCTCAGGTCATTGACAGGGAAGTTTACTAANTCCA
CCCACCCCCGGCATCTCCCCAGCTCTAGGGCTGTAAGGTTTACTATAAAT
CTAAAAGAAATGTGTCTTTTATTTGGGAACTAAATGATCTAAGGTATAGT
AGAAACCCTAAATAATATTTCCCATCACAATATTAGACAACACAATGAAA
CCCCATCTCAAACAACAAAACAAACAACCCAGAATAACAAGAGGAAAGAA
AGAAAATGCATTTTGTCAGGGGAGCTCTCATCCACAATGACTATTTTCAA
AATGTGTCTTTAAGATACATTAAAGCTCAGCTAATGAAGAATTGACTTCT
ACGAAAACTGCTGCTCCTCTAGAGCTGCAGGACCAATAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_m20.b1 MSMg01no320_m20.b1 CHROMAT_FILE:
MSMg01no320_m20.b1 PHD_FILE: MSMg01no320_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:24 2005
         (234 letters)



>mm_chr1_184589312_184589945
          Length = 634

 Score =  406 bits (210), Expect = e-118
 Identities = 231/246 (93%), Gaps = 13/246 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagtgtgtaaggcaaattacagttctccggagctttcctcaaatatttctgaggtagt 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 aacagtgtgtaaggcaaattacagttctctggagctttcctcaaatatttctgaggtagt 260

                                                                       
Query: 61  ctcctggcattcataattggtgttcaactaacgattgttcctaacacgttggaatttctg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctggcattcataactggtgttcaactaacgattgttcctaacacgttggaatttctg 320

                                                                       
Query: 121 ttttgacaagtggtaagtggtaaatatctagagatttctaccattaacttagtgtgtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgacaagtggtaagtggtaaatatctagagatttctaccattaacttagtgtgtgag 380

                                                                       
Query: 181 ccaggtatcttttaaccac-------------tattcattggattgttctagtaatttaa 227
           |||||||||||||||||||             ||||||||||||||||||||||||||||
Sbjct: 381 ccaggtatcttttaaccacatgaatatttatctattcattggattgttctagtaatttaa 440

                 
Query: 228 gatttg 233
           ||||||
Sbjct: 441 gatttg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)