XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
GCCAGCTTTGTCTGCAATGAAAGATGGTGCTTGAAAAATAAGGGAAGGGA
TGATTAATCAGAATAGACTGGGGACATCAGAACTTATTGGAGCCAGGAAG
ATGTGTTTTCTTAAAGTAGCATCAAAACCATGGATCACTTAAAATTATGA
TTGGGAGTCCTTTAGATTTAAGCAGTCCACTAAAACCAGTGGTAGTGATT
ACCGCATGCCTATAGTCTCTTTCAATTTCTTCCAAAAATGATACAGTGGC
TGAAATGCATAAGCTATTAAAACTGAAGAGCAAACAGGCAGCTAGAATCT
AAAGTGCTAATATGCCCTTTTTACATGGGAACACATGGCCAACTGGAATA
TGAGCGTGCAACACGAATGGTACTACCAGTGACTATGAATGTGGCTGGCT
GACAAATCTAGAGCCAGGATGCAAACTGTTTAGCTCCTTGTCTAGCCTGC
CTCACCATAACATCATTCTTGAGCCATTTCTCAGTTTCATGGGTTTCAGC
AGAAGCAACAGACAACCTCACAGAAAACCTCACCAATTAGATGATGTTTT
CTAAATGAAACTTGTGGGTTGATCCATGGGGTAGGCGAAGGCAAATGTAG
TTACTGTGATATTTCACAGATGGAGCAAAGGACTTATAGTCTTTGAGCCT
GCCTTTCCTCACACATAACAATATTTAAATTATTTATGAATTGGGGAAAT
ATAGAA

GCGGGAGGCCGGAGGCGCCGGGTTCCNAACCCGCNNGCACANAGAAGGTG
ACNGCACGCGAAACNNNNNANCAGCCANAGNGCCCAGCCCNNGGNCNCCC
AGAGCCCCCNNAGAGNACNAAGGGCNGGCCAGCAGACANGGCAAGGCANC
AGCGAGGCAACACACGGNGAAAAAAAAAACGAGACAANCGCCNCCANCGA
AACCGNAACNNCGACNNCNCCAAGNNCAGNCAAATTTTTTGGTGACTTTA
CTTATCTTTGTTTATATAGCACAGATGTTAAAAATTATATTTCTCCATGT
TTTTTTTTTTTGACGCCACAAGCACCCCCNNNGAANANAATTTTTTTTTA
CCCCCCCGACTTAACTTCTATAACATTTCAACAATCTCAGCCTANAGACA
CAATACAAAACCATTCCTATACATGTTTAAGCTGTTTTCAGCAAGAAAAA
TATTGCTGCTTAAAATAACAGCGTGTCATACTTAATGACCAATGAAAACC
AAATACACCTGTGCTTAAGACCTATAAAACATGCAACCCTAACTAACATT
TAAGCATGTGCTATACTCGCCTATATTTCTTTTCAGAAATAATGGAAATG
CCAACTTCATATGGAGCCAGACCGCCGGAGAGACGCTGTTTTTTTTTAAT
ACACCTTCGAAGGAAAAAAAGGTCGCAAAACAAATGCCCTTCTAAAACCC
ACCCAATCCTGAACCCCTTAAAAGAAAGTCATAAGAAACGCTTT

Query= MSMg01no321_e21.b1 MSMg01no321_e21.b1 CHROMAT_FILE:
MSMg01no321_e21.b1 PHD_FILE: MSMg01no321_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:01 2005
         (707 letters)



>mm_chr1_12325625_12326731
          Length = 1107

 Score = 1305 bits (675), Expect = 0.0
 Identities = 696/703 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggccagctttgtctgcaatgaaagatggtgcttgaaaaataagggaagggat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 gaattccaggccagctttgtctgcaatgaaagatggtgcttgaaaaataagggaagggat 848

                                                                       
Query: 65  gattaatcagaatagactggggacatcagaacttattggagccaggaagatgtgttttct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gattaatcagaatagactggggacatcagaacttattggagccaggaagatgtgttttct 788

                                                                       
Query: 125 taaagtagcatcaaaaccatggatcacttaaaattatgattgggagtcctttagatttaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 taaagtagcatcaaaaccatggatcacttaaaattatgattgggagtcctttagatttaa 728

                                                                       
Query: 185 gcagtccactaaaaccagtggtagtgattaccgcatgcctatagtctctttcaatttctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gcagtccactaaaaccagtggtagtgattaccgcatgcctatagtctctttcaatttctt 668

                                                                       
Query: 245 ccaaaaatgatacagtggctgaaatgcataagctattaaaactgaagagcaaacaggcag 304
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 667 ccaaaaatgatacagtggctgaaatacataagctattaaaactgaagagcaaacaggcag 608

                                                                       
Query: 305 ctagaatctaaagtgctaatatgccctttttacatgggaacacatggccaactggaatat 364
           ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 607 ctagaatctaaagtgctaacatgccctttttaaatgggaacacatggccaactggaatat 548

                                                                       
Query: 365 gagcgtgcaacacgaatggtactaccagtgactatgaatgtggctggctgacaaatctag 424
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gagcgtgcaaaatgaatggtactaccagtgactatgaatgtggctggctgacaaatctag 488

                                                                       
Query: 425 agccaggatgcaaactgtttagctccttgtctagcctgcctcaccataacatcattcttg 484
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agtcaggatgcaaactgtttagctccttgtctagcctgcctcaccataacatcattcttg 428

                                                                       
Query: 485 agccatttctcagtttcatgggtttcagcagaagcaacagacaacctcacagaaaacctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agccatttctcagtttcatgggtttcagcagaagcaacagacaacctcacagaaaacctc 368

                                                                       
Query: 545 accaattagatgatgttttctaaatgaaacttgtgggttgatccatggggtaggcgaagg 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 367 accaattagatgatgttttctaaatgaaacttgtgggttgatccatggggtaggtgaagg 308

                                                                       
Query: 605 caaatgtagttactgtgatatttcacagatggagcaaaggacttatagtctttgagcctg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 caaatgtagttactgtgatatttcacagatggagcaaaggacttatagtctttgagcctg 248

                                                      
Query: 665 cctttcctcacacataacaatatttaaattatttatgaattgg 707
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cctttcctcacacataacaatatttaaattatttatgaattgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space:   764609
Effective search space used:   764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)