BAC Information

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BAC

Clone NameMSMg01-321O09
Chromosome1 (Build37)
Map Location 55,335,721 - 55,336,371
singlet/doubletsinglet
Overlap genenone
Upstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2
Downstream geneLOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321O09.T7 (MSMg01no321_o09.b1)MSMg01-321O09.TJ (MSMg01no321_o09.g1)
ACCAG440744AG440745
length723714
length of high quality
(start - end)
650 (74 - 723)57 (241 - 297)
definitionCHROMAT_FILE: MSMg01no321_o09.b1 PHD_FILE: MSMg01no321_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:44 2005CHROMAT_FILE: MSMg01no321_o09.g1 PHD_FILE: MSMg01no321_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAGAGAGACCGCG
GAATTCAGCAGATACCTTAAAAGCCATGAAGTAGTAGACTTCAATACCTG
AAAGTAAATAGCTACCAACCAACATTGGTACATCCACTTACCCTTTATAA
CCAATGGAAAAATATACACATCAAGAGAATACAAATTAGTGACCATTAAA
AAAGACAATTAAATGAATTCTAAGCACAGAGGGAAAAAAACAAACAAACC
TCGATTATGAGAGAAGAACAAAGACTACATTTCATTTGAGGAAGAGATGA
ACAAAGTAAACCTGAGGTTTTAAATCATATCTAATTGTAAGTTAGTGCTC
CCTACTACTAATTGTAACCCCCCCCCCCAACCTGAAGCTGGCTGAACCAG
ATCTTGACCTTGCTGACCCTGAGGAGATTATCTAGGGTGGAGCCTCCCTA
GATCACTCTATTGTTCAGCCACTGTCGCTGTTACTTGTAGGGAGGCCGCC
TAGCTATTCCGGAGACTACACCCTATCCTGCATGTGGTCACCTGCAGCTG
GGCTCCAAGCATGAATCTGCGGGAATGGGTCTCCCCCCTTCTTTATAAAG
CGCATCCGCCATTGAACATTTGAACCTTGAACAGACTAGCATATCTTGGT
TTCCATTATTTCTCGACCCGCCTAGTTTCCCTCTTCTCTTTCAGCTCCCG
TTGCCTCCCAGGCTCGAACCCAG
ATGAAGTGGGACGCGGGNGGCGCCGTTTCCCACCGCAGGNGAACNANAGA
TTACGGCAGCNGAGGGANNANNCANNNANNGAANANNAANCAGGNGGNGG
NNGGCCCCGCAGCNCGCNNNCAAGGGCAGGAANNAGCAGCACCGCGGCAG
NNCAGCGGAAGNACANANCCCNACCAGAGAACAAACCNAGGNAAGAAGGC
ACCNGGGGAAANNNCACCAAGGGAAGGGGCGGGTTTTTTCTGCAGAGGNG
ACAGAGGNTATGCCTGTGTGACAGCCTGGAACTGCAAAAAGACGGCATTT
TGGTGGTTTGACCNCAANCAAACACNANCCGANAAGGNAGCATTTTTTTG
CCCCCCCCCCCCCCAANCATATGAAATCCACTATCAGAGGGATCTTACCC
CCAGATCTTTAAAAATGTTCAATTTTCAACAGTTTTAAGCATGGGAACTC
TAAATACATGATCTTCTCAGAGCCGGACCCCTTTCAGAAAACCCCATCAA
AATACGTTTTAAAAACTAGTTTACCAGCAGCAGACAAAAACAGCGTCGGA
CAATGCCCTCAGTAAAGGACAGCTTACAAATACCGCCAGCAGCGGATAAA
TGATGGCTCTCTCATCCCGAGCTATATATTGTTTTTTTTTTTTGTCCCGA
CCGTGCTGAAGCGCCTGTACTTTGACGAGGCCCCAACAGCTAAGATGCTA
CCGAACCCGAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_o09.b1 MSMg01no321_o09.b1 CHROMAT_FILE:
MSMg01no321_o09.b1 PHD_FILE: MSMg01no321_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:44 2005
         (650 letters)



>mm_chr1_55335521_55336570
          Length = 1050

 Score = 1189 bits (615), Expect = 0.0
 Identities = 642/655 (98%), Gaps = 9/655 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatgaagtagtagacttcaatacctgaaagtaaatagctaccaaccaacattggtacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ccatgaagtagtagacttcaatacctgaaagtaaatagctaccaaccaagattggtacat 260

                                                                       
Query: 61  ccacttaccctttataaccaatggaaaaatatacacatcaagagaatacaaattagtgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacttaccctttataaccaatggaaaaatatacacatcaagagaatacaaattagtgac 320

                                                                       
Query: 121 cattaaaaaagacaattaaatgaattctaagcacagagggaaaaaaacaaacaaacctcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattaaaaaagacaattaaatgaattctaagcacagagggaaaaaaacaaacaaacctcg 380

                                                                       
Query: 181 attatgagagaagaacaaagactacatttcatttgaggaagagatgaacaaagtaaacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attatgagagaagaacaaagactacatttcatttgaggaagagatgaacaaagtaaacct 440

                                                                       
Query: 241 gaggtttt----aaatcatatctaattgtaagttagtgctccctactactaattgtaacc 296
           ||||        ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagg----ggaaaaatcatatctaattgtaagttagtgctccctactactaattgtaacc 496

                                                                       
Query: 297 ccccccccc-aacctgaagctggctgaaccagatcttgaccttgctgaccctgaggagat 355
           ||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 497 ccccccccccaacctgaagctggctgaaccagatctcgaccttgttgaccctgaggagat 556

                                                                       
Query: 356 tatctagggtggagcctccctagatcactctattgttcagccactgtcgctgttacttgt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tatctagggtggagcctccctagatcactctattgttcagccactgtcgctgttacttgt 616

                                                                       
Query: 416 agggaggccgcctagctattccggagactacaccctatcctgcatgtggtcacctgcagc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agggaggccgcctagctattccggagactacaccctatcctgcatgtggtcacctgcagc 676

                                                                       
Query: 476 tgggctccaagcatgaatctgcgggaatgggtctccccccttctttataaagcgcatccg 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgggctccaagcatgaatctgcgggaatgggtctccccccttctttataaagcgcatccg 736

                                                                       
Query: 536 ccattgaacatttgaaccttgaacagactagcatatcttggtttccattatttctcgacc 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ccattgaacatttgaaccttgaacagactagcatatcttggtttccattatttctcgacc 796

                                                                  
Query: 596 cgcctagtttccctcttctctttcagctcccgttgcctcccaggctcgaacccag 650
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 797 cgcctagtttccctcttctctttcagctccggttgcctcccaggctcgaacccag 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)