BAC Information

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BAC

Clone NameMSMg01-321O14
Chromosome1 (Build37)
Map Location 58,452,408 - 58,615,842
singlet/doubletdoublet
Overlap geneBzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806
Upstream gene1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262
Downstream geneNdufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321O14.T7 (MSMg01no321_o14.b1)MSMg01-321O14.TJ (MSMg01no321_o14.g1)
ACCAG440754AG440755
length735736
length of high quality
(start - end)
298 (433 - 730)343 (75 - 417)
definitionCHROMAT_FILE: MSMg01no321_o14.b1 PHD_FILE: MSMg01no321_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:45 2005CHROMAT_FILE: MSMg01no321_o14.g1 PHD_FILE: MSMg01no321_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,452,408 - 58,452,702)(58,615,501 - 58,615,842)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGCCATCTAGGGCTACATAGGGCTGCTTCAAAAGGATGAAGCACA
CATTAACCTGTTGAGTAGTTCTCGAGGAAATGGAGAATGGGCTAACTACT
GGTTTTAAGGTTGTTTCTGGTTTTCTACCTTTCATAGAAAGTTTGACACA
TATGACAGCATCTTTGTATATTCTCCATAGTCTGTCCCCCGGTTGTGTAT
TCCAGCCTTTGGTAGGTATAGTTTTAGCCAATAGATTTTCTTAAACTAAA
GCAGTTTATCAATAATGAAGGAAATTGGGGCTGGAGAGATGGCTCAGCCA
GTTAAGAGTTTTTACTGTTCTCCCCCCCGCTCTGAGTTCAAATCCCAGCA
ATCACATGGTGCCCCACACCCGACCATGAGATCTGACGCCCCCTCCTGGT
GTATCTCAAGTCAGCTACAGTGTACTTACATATAATAAATAAATCTTTAA
AAGAAAATAATAAGGAAACTATTCTCTGAGTTTGTAGATTCCTAGCACTA
TCTTGATAAAATTGTATAACTTTTATTCTTAGCATCTGGGAGATATCACT
TAAATCCAGATAAAGTGGTGTGGCATCCGCCTGTAATCCAGCACTCATAC
TACAGAGGCAGAAGAGTTGCCAATGTTAATTGGACCATCCTAGGATGCAA
AAACCAGTCTTTGAGTACCTCCCCCAATAACAAAA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAAGTTAGAGTTTTTTTGTGGAATTT
TAAATTAGAAATTTAGTTGGGGGTGGTAATAAGAGAGTGCAGCATGGGGA
ACTAAGATCAAGGTTCATCATATACATATATGGAAATGTCGTAATAGAAC
CATTGTTTGTACAAGTAATACACATTACTACTTTTAAAATTTAGTGCGGA
ATTCAACAAACATAGAAAGGGCATCTTTTTAGTAAGAGAGTGTTTCAGTT
ATTTCATAGACAATCCTGCTTCTTCAGGTTCTATTTTCATTTGTCTTGGT
TTTTTTCCTTATTCTTTCCTTTTGAATGACAAAGAAGATTGAAATACAGT
GTATCTTATTTTTACCCCCCCACTAAATAGATAAGACTACCCTCAATAGC
AAGCATTTAACAATTGAGCATGTATTTTTTCCAGGCTTTTTTAAAAAAGT
AAGCTTTAATTGGAATTACAATTTACAGACTATTATTCAGTTTGATTTTG
CTACTTAATCAGCTTGCTACCTATATGACCCTTGCTTTTTTTAGATTTGA
CATCATTTTTCAGCGTTGTTGTTGTTGTTGACGATCCAGGGTGTTGCTGT
GTAGTCCAGGCTTGTCTTAGTGCTTACTGCATACCCCAGAGTAACCTCCC
CTCACAGTCCTCTTGCCTCAGCCTCCCCAGTACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_o14.b1 MSMg01no321_o14.b1 CHROMAT_FILE:
MSMg01no321_o14.b1 PHD_FILE: MSMg01no321_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:45 2005
         (298 letters)



>mm_chr1_58452205_58452902
          Length = 698

 Score =  545 bits (282), Expect = e-160
 Identities = 293/298 (98%), Gaps = 3/298 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacgccccctcctggtgtatctcaagtcagctacagtgtacttacatataataaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctgacgccccctcctggtgtatctcaagtcagctacagtgtacttacatataataaataa 263

                                                                       
Query: 61  atctttaaaagaaaataataaggaaactattctctgagtttgtagattcctagcactatc 120
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atctttaaaagaa---aataaggaaactattctctgagtttgtagattcctagcactatc 320

                                                                       
Query: 121 ttgataaaattgtataacttttattcttagcatctgggagatatcacttaaatccagata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgataaaattgtataacttttattcttagcatctgggagatatcacttaaatccagata 380

                                                                       
Query: 181 aagtggtgtggcatccgcctgtaatccagcactcatactacagaggcagaagagttgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtggtgtggcatccgcctgtaatccagcactcatactacagaggcagaagagttgcca 440

                                                                     
Query: 241 atgttaattggaccatcctaggatgcaaaaaccagtctttgagtacctcccccaataa 298
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 atgttaactggaccatcctaggatgcaaaaaccagtctttgagtgcctcccccaataa 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no321_o14.g1 MSMg01no321_o14.g1 CHROMAT_FILE:
MSMg01no321_o14.g1 PHD_FILE: MSMg01no321_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:45 2005
         (343 letters)



>mm_chr1_58615301_58616045
          Length = 745

 Score =  627 bits (324), Expect = 0.0
 Identities = 337/342 (98%), Gaps = 2/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagttagag--tttttttgtggaattttaaattagaaatttagttgggggtggtaataa 58
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 taagttagaggttttttttgtggaattttaaattagaaatttagttgggggtggtaataa 483

                                                                       
Query: 59  gagagtgcagcatggggaactaagatcaaggttcatcatatacatatatggaaatgtcgt 118
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 482 gagagtgcagcatggggaactaggatcaaggttcatcatatacatatatggaaatgtcat 423

                                                                       
Query: 119 aatagaaccattgtttgtacaagtaatacacattactacttttaaaatttagtgcggaat 178
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 422 aatagaaccattgtttgtacaagtaatacacattactacttttaaaatctagtgcggaat 363

                                                                       
Query: 179 tcaacaaacatagaaagggcatctttttagtaagagagtgtttcagttatttcatagaca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcaacaaacatagaaagggcatctttttagtaagagagtgtttcagttatttcatagaca 303

                                                                       
Query: 239 atcctgcttcttcaggttctattttcatttgtcttggtttttttccttattctttccttt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atcctgcttcttcaggttctattttcatttgtcttggtttttttccttattctttccttt 243

                                                     
Query: 299 tgaatgacaaagaagattgaaatacagtgtatcttattttta 340
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgaatgacaaagaagattgaaatacagtgtatcttattttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 745
Length adjustment: 9
Effective length of query: 334
Effective length of database: 736
Effective search space:   245824
Effective search space used:   245824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)