BAC Information

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BAC

Clone NameMSMg01-322I06
Chromosome1 (Build37)
Map Location 156,723,206 - 156,723,518
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4, Qscn6, Cep350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322I06.T7 (MSMg01no322_i06.b1)MSMg01-322I06.TJ (MSMg01no322_i06.g1)
ACCAG441192AG441193
length728784
length of high quality
(start - end)
316 (46 - 361)271 (73 - 343)
definitionCHROMAT_FILE: MSMg01no322_i06.b1 PHD_FILE: MSMg01no322_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:30 2005CHROMAT_FILE: MSMg01no322_i06.g1 PHD_FILE: MSMg01no322_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCAGGCTGTTCCAGGTTTGCGTCCTTGCTTCTCAGGGTCATTTTA
ACTCAGAGCACAGGTTGGCTTATCTGAAGTTGGGGACAGATTCCACAGGC
TTCCTTTCCACCCACATACCTTTGAGAGACTGCTCCCCCCCCCCCGCCCA
CTCCTGCCAGGCCAGTCAGTATCGTCTTTAACTGTCTACAACACTCTGCA
CCTTACTCTTCTCCCCAGCTGTGGACGAGCAGATCCACTCACCTCCTCTG
CTGAGGGCTGAGTCAATATAGTTCACCTACTCCCTCCAGTATTGTGAGTC
ACAGCTTTTCTTATTTTTTAGCCCCCCCCCCCCCAACTTCAAGCCCTGGT
GAGGCTCCAGTGGTAGCCCACCCACAAAAATAATCACTGCCCTGCCCCTG
TCTCTCATTCTATCATGACTTATCATCCTTCCTGTGCTGAAAACCCAGAA
CTTGGATCCACAGCCTTTATCAGGACTACTTACTCAATTTCTCGGCAACT
CCAGGAGGAAGCCCAGTCCTAGTGTATGGTTCCTAAACAGCAACATCAGC
ACCACTAAGACTTTCTCTTCTTGACTGCCAGAGNTCTGTGTCAGGCCCAC
TCTGGAGTGGGTGACCATCAAGTGAATCATGTGACCTTGAGAGATTTTGT
TGAAAGGATGGATGGAGGTTAGTACTGT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAGTGCCCAGGGACTCCAGCTCTTTC
ATAACAGCCTGCAAGGGAAGTGAGAAGAATCCACCCATGATCAAAATGCA
TATATAAGAAACAGAAACAGCTGGGTATGGTAGTACACACTGAAACCCAC
CATGCCCTTGAGGCTCAGGCAAGAGTATCTTGAGTTCTAGGTCAGCCTGG
AATACAGAGAAAACACATATCTCACAAAATAAGGTAGGAGAGAGGAAGGG
GGTAGATAAATGAAGAAGGTATAGGGAGGAAGATGGGTAAATGCTTCTCC
CNCTCCTTTTTTTTTTTTTCCCCCNNGCGTGCCCCCCCTGTTTTTTTTTG
TTGNTTTTTGTTTTTTTTTCCCCCCCCCCAAAAAAAAAAAAAGATGGGGG
GGGGGGGGGGGGATTTTTTTTTTTTCTTCTTTCCCTTTTTTTTCTTTTCT
CATTTCTTTATACCCCCCATTTGCAATTCCTCTTTTTAACTTCCACCCTT
CCCATTTTTTTTTTTTTCTTTTATCTTTCTTTTCCCTTCTTTCTTCCTTT
TTTTCCTCCCCCTTTTACTTTTTTCNTATTCCAAAGTCACCATTATTTTA
CTTTTGTCTTTATTCTTCCACCGTTTCACTCTCTTCTACTTTTTCTCTTT
ACTCCCTTTTTTTCTCCCCCCCCTTTTTTCTCCCCCTCTTTTTTATTTTT
TTTTTTTTCTTCCCCTTTCCTCGCTTGTTTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_i06.b1 MSMg01no322_i06.b1 CHROMAT_FILE:
MSMg01no322_i06.b1 PHD_FILE: MSMg01no322_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:30 2005
         (316 letters)



>mm_chr1_156723002_156723719
          Length = 718

 Score =  594 bits (307), Expect = e-174
 Identities = 311/313 (99%), Gaps = 2/313 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccaggctgttccaggtttgcgtccttgcttctcagggtcattttaactcagagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcccaggctgttccaggtttgcgtccttgcttctcagggtcattttaactcagagc 458

                                                                       
Query: 65  acaggttggcttatctgaagttggggacagattccacaggcttcctttccacccacatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 acaggttggcttatctgaagttggggacagattccacaggcttcctttccacccacatac 398

                                                                       
Query: 125 ctttgagagactgct--cccccccccccgcccactcctgccaggccagtcagtatcgtct 182
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctttgagagactgctcccccccccccccgcccactcctgccaggccagtcagtatcgtct 338

                                                                       
Query: 183 ttaactgtctacaacactctgcaccttactcttctccccagctgtggacgagcagatcca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttaactgtctacaacactctgcaccttactcttctccccagctgtggacgagcagatcca 278

                                                                       
Query: 243 ctcacctcctctgctgagggctgagtcaatatagttcacctactccctccagtattgtga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctcacctcctctgctgagggctgagtcaatatagttcacctactccctccagtattgtga 218

                        
Query: 303 gtcacagcttttc 315
           |||||||||||||
Sbjct: 217 gtcacagcttttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 718
Length adjustment: 9
Effective length of query: 307
Effective length of database: 709
Effective search space:   217663
Effective search space used:   217663
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)