BAC Information

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BAC

Clone NameMSMg01-322L04
Chromosome1 (Build37)
Map Location 108,376,253 - 108,376,547
singlet/doubletsinglet
Overlap genenone
Upstream genePign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075
Downstream geneBcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322L04.T7 (MSMg01no322_l04.b1)MSMg01-322L04.TJ (MSMg01no322_l04.g1)
ACCAG441322AG441323
length751803
length of high quality
(start - end)
---295 (78 - 372)
definitionCHROMAT_FILE: MSMg01no322_l04.b1 PHD_FILE: MSMg01no322_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:43 2005CHROMAT_FILE: MSMg01no322_l04.g1 PHD_FILE: MSMg01no322_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
N
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCTTCAGAAATTCCTAGCAATGACAAGCCAGTGTCA
AAGCTAAACAAATTGTTTGGGGACAGATGTTTTTAAAAACGTGAATACCT
TTTGGCCAGAACAAAAGTTACAGAAAGGTAAATTTTTACCAAGGTTTCTG
TGCTCAGCAGGGTGAAGTCAGATGCTGTATTTATAGACTTCCAAGACACC
TGTGACACAGTCCTCTAAAAGCTGGCAAATACGTTCACTAGTATTTAAAA
CTCACTAAAATTGCTTTTAATGGTGCCAGTCTATTTTTGAAATATGTTGT
AAAAATCAAAATTGCTTCTGTCCAACATGCACCATATTAATGCAACATTT
ATGCTTATCAGCAATTACCCCCCGCCACAGAACAAGACCACCACGACCGC
CATGACCTGCTCTTGGAGCTTATTGTATACTCAATGCATTACTCAATGCA
GACACTACTAATAAATAGTATCTGGTGTGCGAGCTTTTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTCCCTTTAACATCTC
TTATCCCTCTCCTCCTCTTCTTTTTACGTTTTCCCTTTTCCTACCTTATT
ATTTCCCCCCACCCATTCCCCGTCTCTTTTTCGACACCACATTAATTTTT
TCCCATCTTTCTCTAACCCTTCCTTATTCCTTTATCTCTCCTACCCTACC
ACCACCCCTCCTAATATCCACTCCTCTTTCTTCCTTCCCTACCTCTTATT
TAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_l04.g1 MSMg01no322_l04.g1 CHROMAT_FILE:
MSMg01no322_l04.g1 PHD_FILE: MSMg01no322_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:43 2005
         (295 letters)



>mm_chr1_108376053_108376747
          Length = 695

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagcaatgacaagccagtgtcaaagctaaacaaattgtttggggacagatgtttttaaa 60
           ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 495 ctagcaatggcaagccagtgtcaaagctaaacaaattgtttggagacagatgtttttaaa 436

                                                                       
Query: 61  aacgtgaataccttttggccagaacaaaagttacagaaaggtaaatttttaccaaggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aacgtgaataccttttggccagaacaaaagttacagaaaggtaaatttttaccaaggttt 376

                                                                       
Query: 121 ctgtgctcagcagggtgaagtcagatgctgtatttatagacttccaagacacctgtgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctgtgctcagcagggtgaagtcagatgctgtatttatagacttccaagacacctgtgaca 316

                                                                       
Query: 181 cagtcctctaaaagctggcaaatacgttcactagtatttaaaactcactaaaattgcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtcctctaaaagctggcaaatacgttcactagtatttaaaactcactaaaattgcttt 256

                                                                  
Query: 241 taatggtgccagtctatttttgaaatatgttgtaaaaatcaaaattgcttctgtc 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 taatggtgccagtctatttttgaaatatgttgtaaaaatcaaaattgcttctgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)