BAC Information

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BAC

Clone NameMSMg01-322M19
Chromosome1 (Build37)
Map Location 150,552,491 - 150,552,872
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322M19.T7 (MSMg01no322_m19.b1)MSMg01-322M19.TJ (MSMg01no322_m19.g1)
ACCAG441396AG441397
length750770
length of high quality
(start - end)		249 (75 - 323)383 (76 - 458)
definitionCHROMAT_FILE: MSMg01no322_m19.b1 PHD_FILE: MSMg01no322_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:50 2005CHROMAT_FILE: MSMg01no322_m19.g1 PHD_FILE: MSMg01no322_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGGCGGA
ATTCCTCTTATGGTTTCTGAAAGAACCCACAATTATGTGCACAAACATAT
GAATGTGTGTGCGTGTGTTTTGTGTGTGTGTGTATCATAGATGTTTTTTA
AGTTCTTATTTATTTTTGAAACATGGTCTCTCATTGTAGATGGTATCAAA
TTCAGACTTCTTTGCCTCACCTCTAATCTGGGATTAAAAATATGCACCAC
TCTGCCTGGCGAAGTCCATGGAATTTTAGTAGTCCTGTGCATTGAAGTTA
ATCAATGTGGTATTTCACCTCTTTTATTATTTTGTTGCTAATTCAATAGA
AATCAATAGATGCTTCAGTTTAGATTTTATGTTAACCTAGATTACAGAAA
TGACAATGAACTTATCAGCGCCCCCGCCCAAGTGTGCTTGAGTTTTTAAG
TCACCAGCAACATCAGGGTGGCATGAGATAAGTCCTGCTATCTTATGTCA
TTTGACTCCTGGAGTGTCAAGACAAAGCCCCAAAGGTTTGATGGATGCTT
CAACACTTGTTGAGTCTTCATCTCCTTACCCATCTGGCGTTGGAGTTACA
TAATGCCTATGGTCCTACCTGTATGACATATCTCCGTAGAGTACAGTGAC
AAGTTATTTTGTCTTTTCTTTTAATTTACTACAACTAGACTCTTTCTTGC
ATAATAATCAACTTTAATATTGTTCATCATGTCTGTGACTATTATCTTAG


NCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATATTGCAAGAATTTTTTGAGTATT
TTTGCATCTCTATTTATAAGGGAAATTGCTGTATCATTCTCTTTCTTTGT
GTGGCCTTTATGTAACTCTGGCCTTGGAAAACAAATTGAGCAACATTGTA
GCTTGACTATATTCTAGTTGATGGCTCCATACTCAGAAATGTGTAGATAG
CACACATTGGAACTATTGAATTATTGCTTTATTTTTAAAAGACAGAAATA
TGATTTATCAGCTCAGAGTAAAAGACTTATATTATTTTACACAGAAAATG
TGTATAAGGTTTTTTTTCATAATTTCTGTTGGTTAACGGAGAAAGAATGT
GCATATGCATGTGTATGTAACCCTTGTGTGTGTGTGTGTATGTGTGTGTG
TGTGTCNTCCCCCTCCTTTGTATTCCCCCTTGTGCTTGTTTTCGCGCCTC
ATTCCGCCTATGTTCCCCCTTCTCTTGGTCTTACCTCCCCCCCTTATCCC
TTCTACTGTTCTCTTTTTTTCTTTTTCCCATAATTATACTCCTCCCCCCA
TTTGTCCCCTTTTTTCTCTCTTTTCCCATTTTTTCCCCCTTTCCAACTTC
ACATTCTCTATTTTCCCTTTTACTCCTTTTCTTTCACCACCTCCCTCCCT
TTAAACATTTTGCTTTCCTTCCCACTTCCTTAATTCCCCCTTCTTTTACT
CCTCTTCGACTTTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_m19.g1 MSMg01no322_m19.g1 CHROMAT_FILE:
MSMg01no322_m19.g1 PHD_FILE: MSMg01no322_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:50 2005
         (383 letters)



>mm_chr1_150552291_150553073
          Length = 783

 Score =  675 bits (349), Expect = 0.0
 Identities = 373/385 (96%), Gaps = 8/385 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattgcaagaattttttgagtatttttgcatctctatttataagggaaattgctgtatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattgcaagaattttttgagtatttttgcatctctatttataagggaaattgctgtatc 260

                                                                       
Query: 61  attctctttctttgtgtggcctttatgtaactctggccttggaaaacaaattgagcaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctctttctttgtgtggcctttatgtaactctggccttggaaaacaaattgagcaaca 320

                                                                       
Query: 121 ttgtagcttgactatattctagttgatggctccatactcagaaatgtgtagatagcacac 180
           ||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 321 ttgtaacttgactatattctagttgatggctccatactcagaaatctgtagagagcacac 380

                                                                       
Query: 181 attggaactattgaattattgctttatttttaaaagacagaaatatgatttatcagctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attggaactattgaattattgctttatttttaaaagacagaaatatgatttatcagctca 440

                                                                       
Query: 241 gagtaaaagacttatattattttacacagaaaatgtgtataaggttttttttcataattt 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 gagtaaaagacttatattattttacacagaaaatgtgtataagtttttttttcataattt 500

                                                                       
Query: 301 ctgttggttaacggagaaagaatgtgcatatgcatgtgtatgtaaccctt-----gtgtg 355
           |||||||||||||||||||||||||||||||||||||||||||||   ||     |||||
Sbjct: 501 ctgttggttaacggagaaagaatgtgcatatgcatgtgtatgtaa---tttttgtgtgtg 557

                                    
Query: 356 tgtgtgtgtatgtgtgtgtgtgtgt 380
           |||||||||||||||||||||||||
Sbjct: 558 tgtgtgtgtatgtgtgtgtgtgtgt 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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