BAC Information

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BAC

Clone NameMSMg01-323C03
Chromosome1 (Build37)
Map Location 105,678,858 - 105,679,530
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323C03.T7 (MSMg01no323_c03.b1)MSMg01-323C03.TJ (MSMg01no323_c03.g1)
ACCAG441638AG441639
length1,2091,183
length of high quality
(start - end)		723 (89 - 811)686 (90 - 775)
definitionCHROMAT_FILE: MSMg01no323_c03.b1 PHD_FILE: MSMg01no323_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:20 2005CHROMAT_FILE: MSMg01no323_c03.g1 PHD_FILE: MSMg01no323_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCACGTATTTNNNNCCATTGGCGCTAAGACTCACTAAGGGAGAGGATC
CGCGGAATTCCATATCAGCTTTTATCCGTTAAGGATGTATTTACATTTCA
AATGCTATCCCCTTCCCTGGAGTCGCCCATAACCCATTGCTTTCCCCCTG
CTTCTATGAGGGTGCTCCCCCTCCCACCTAATCACTCTCAACTCACAGCC
CTGGCATCTTCTTACACTGGGAAATTGAGCCCTCACAGAACCAAGGACGT
TTCTTCCTATTGATGCCTGACAATGCCATTCTCTGCCACATAGGTGGCTA
GAGCTAAGGGTCTTTCCATATACACTCTTCAGTTTGTGGTTTAGTCCCTG
AAACCTCTGGGGGTTCTGGTTCTTTGACATTGTGGTTCTAAACACCTTCA
GCTCCTTTAGTCCTTTCTCTAACTCCTCTATTGGAGTCCCCATGCTCAGT
CCAATGTTTGACTGTGAGTATCCACCTCTGTATTTGTCAGGATCTGGCAG
AGCCTTTCAGGAAAAAGCTATAAAAAGCTCCTGTCACCAAGCACATCTTC
GCATCTGCAATAGTGTCTGGGTTTGGTGTCTGTATATGGGATGGATCTCC
AGTTGGGGCAGTATTTGGATTTCATTTCCTTCAGTCTCTGCTCCACACTT
TGTTCCTGTGTTTCCTTTAGATGGGAGACATTTTGGGTTAAAAATTTGGA
GATGAGTGTTTGGCCCCATCCCCTAACAGGGAGCCTTGCCTAACCTCTGA
GTATAGTCTCAACAGGTTCTCTCTCCCCTTTGTTGGTCATTTCAGCTAAT
CTCATCCCTGTTGGGTCCTGAGAGACTCTTTCTTTCCTGGCATCTGGGAC
TTTCTGGGTGGTATTCCCAATTCACCATTCCACATTGGTACACATCTCTG
TTCAACTTTCTGAAACCCTGTATACCATTCTTATCTCCTCCCACAAACAA
ATCCGAACCCCCTTTTTTCACTCCCCCCCCTTTTTTTTTCCCAAAAGCCC
CCCATCCCCCAACTTCCCTTGAGAAGTTTATTTTCCCCTCCCCCCGGGAC
CGGAAAAGAAAAAATTTTGGGCTTTCTTTTTCTTAAGGTCAAAGAGACCG
GGGAATGGAATTTGGGGGAATAAAGAAAAAAAAACTTTTGGCTTATATTC
CCATTATAAGAGGGATCCAGGGGGGTCTCTTTTACGGGATTTTCCCCTCC
AAAAAAATT

NCCCAATCTTTTTNNNNCAGCATGGAGGCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACGAAGAAAACAGTTT
ACCCAAGACATAACATGCCCGCTGAAACATAAACACAGAGAGACTACAGC
AACATTCCCATACCTGACAAGGCTTAAGGAAAACAGAGTCCTAGCAATAA
GCATGAGAAATGGACATAATCTCACATCCATAGCACAGAAGGACTATTCA
ATTAGTAACCACTTGAAAAGGAAAAATTAGTCATTTTCAATGATGGCTCA
TTGGGTATATTAAGTACTGCAGGATAGAAACCCCATACCAAGGAGATGTC
CAACCCAAAATAACGTCAATTGTATTCACATAGACTTTCTTTTATTTTTT
TTATCATTGTGCTTCATTTAAGCATTATTTTTGTTTGTTATTTTTAACTC
CTATATTTTGGTTTCCCATTCTGTGGGGCTTTATGAGTTTTGTGTATGTG
TTTTTATATTGTTTTGTTGTTTGTTTTGTTTTGTTTTGTTTTCTANAGTA
AAAGGAAGATAAAGGAGATGGAGGTGCAAGAAGATCTATCGGAGAGAAGT
TAAAGAAGGATGGAAAAGATTATCAGAATATGTTGTATGAAAAAAGTTCA
ATGGAAAAAGAGGCAAACAAATATACAACCCAAACTAATTATAACCTGTC
TTGGAGCACATGCCTTGGCTTTAACAATATGTTTCCTAGGCTCTTTTCCT
CACCATGCTGTACATTTTGGATATTGGTGCTGTTGTTTGTTTGCTCATTT
TGGGGTTTCTCAGCTTCCTACTTTAATTGTATACTTGCATAATGATTGTT
AGGAACAACCATGGCCCAAAATCAACATTCTGGTCTTTAGAATTATTTGA
GGGAAATATTGTAATAAAAAATATATTAAAAAAATTCTTAGGGTCCCCCA
CAAAAAAAAAAAAAAAATTTTTCTCCCACAACCAGGCATGGGGGGGGGGC
GCCTTTATTCTCCCCCCCTCCGGAAACAAAAAATAGTGGGATTTTTAGAT
TTGGACCACCCGGCCCTCCAAAGGATGTTTCAGAACGCCCTGGCTAAACA
AAAAAAACGGCTCCTCATNCAAANATTAATTAATAACTATATACAAGCTC
AACTCAAAGATAAAAATTTCTCCCCCCCTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_c03.g1 MSMg01no323_c03.g1 CHROMAT_FILE:
MSMg01no323_c03.g1 PHD_FILE: MSMg01no323_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:20 2005
         (686 letters)



>mm_chr1_105678658_105679742
          Length = 1085

 Score = 1025 bits (530), Expect = 0.0
 Identities = 641/685 (93%), Gaps = 16/685 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaacagtttacccaagacataacatgcccgctgaaacataaacacagagagactacag 60
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 201 gaaaacagtttacccaagacataacatgcctgttgaaacataaacacagagagactacag 260

                                                                       
Query: 61  caacattcccatacctgacaaggcttaaggaaaacagagtcctagcaataagcatgagaa 120
           || |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 261 cagcattcccatacctgacaaggcttaaggaaaacag-gtcctagtaataagcatgagaa 319

                                                                       
Query: 121 atggacataatctcacatccatagcacagaaggactattcaattagtaaccacttgaaaa 180
           ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 atggacataatctcacacccatagcacagaaggaatattcaattagtaaccacttgaaaa 379

                                                                       
Query: 181 ggaaaaattagtcattttcaatgatggctcattgggtatattaagtactgcaggatagaa 240
           ||||||||||| |||||||||||||||||||||||||||||||||||||  || ||||||
Sbjct: 380 ggaaaaattagacattttcaatgatggctcattgggtatattaagtactatagaatagaa 439

                                                                       
Query: 241 accccataccaaggagatgtccaacccaaaataacgtcaattgtattcacatagactttc 300
           ||||||||||||||||||||| |||||||||||||||| ||||        |||||||||
Sbjct: 440 accccataccaaggagatgtcaaacccaaaataacgtcgattg--------tagactttc 491

                                                                       
Query: 301 ttttat---ttt-ttttatcattgtgcttcatttaagcattatttttgtttgttattttt 356
           ||||||   ||| |||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 492 ttttatttatttattttatcattttgcttcatttaaggattatttttgtttgttattttt 551

                                                                       
Query: 357 aactcctatattttggtttcccattctgtggggctttatgagttttgtgtatgtgttttt 416
            ||||||||| ||||||||||||||||||||||||||  ||||||||||| |||||||||
Sbjct: 552 -actcctatactttggtttcccattctgtggggctttgggagttttgtgtgtgtgttttt 610

                                                                       
Query: 417 atattgttttgttgtttgttttgttttgttttgttttctanagtaaaaggaagataaagg 476
           || |||||||||  |||||||||||||||||||||||||  ||||||| |||||||||||
Sbjct: 611 attttgttttgt--tttgttttgttttgttttgttttcttgagtaaaaagaagataaagg 668

                                                                       
Query: 477 agatggaggtgcaagaagatctatcggagagaagttaaagaaggatggaaaagattatca 536
           || |||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||
Sbjct: 669 agttggaggtgcaagaagatctatctgagagaaattaaagaaggatggaaaaggttatca 728

                                                                       
Query: 537 gaatatgttgtatgaaaaaagttcaatggaaaaagaggcaaacaaatatacaacccaaac 596
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 729 gaatatgttgtatgaaaaaagttcaatggaaaaagaggtaaacaaatatacaacccaaac 788

                                                                       
Query: 597 taattataacctgtcttggagcacatgccttggctttaacaatatgtttcctaggctctt 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 789 taattataacctgtcttggagcacatgccttggctttaacaatatgtttccaaggctctt 848

                                    
Query: 657 ttcctcaccatgctgtacattttgg 681
           |||||||||||||||||||||||||
Sbjct: 849 ttcctcaccatgctgtacattttgg 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1085
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1075
Effective search space:   726700
Effective search space used:   726700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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