BAC Information

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BAC

Clone NameMSMg01-323E11
Chromosome1 (Build37)
Map Location 129,662,181 - 129,830,253
singlet/doubletdoublet
Overlap geneAcmsd, Ccnt2, Ysk4, Rab3gap1
Upstream geneE030049G20Rik, LOC383559, Mgat5, LOC667090, Tmem163
Downstream geneZranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323E11.T7 (MSMg01no323_e11.b1)MSMg01-323E11.TJ (MSMg01no323_e11.g1)
ACCAG441745AG441746
length1,2331,189
length of high quality
(start - end)		276 (126 - 401)720 (92 - 811)
definitionCHROMAT_FILE: MSMg01no323_e11.b1 PHD_FILE: MSMg01no323_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:39 2005CHROMAT_FILE: MSMg01no323_e11.g1 PHD_FILE: MSMg01no323_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,662,181 - 129,662,455)(129,829,787 - 129,830,253)
sequence
NCCGCGCTTTTNNNNNCCATTGGGCGCTATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAAACTAGTGAGAGACCCTGAGAGATCAAGCAAGGTGG
ACAGCAGATGGGAGTGCCGTAAAGGCCTCCTTACTCAAGCACACTCAGAA
GCCAGACTAGCCCTAGATTTGCAATTTTTAGAAGACCTAATAGTGACACC
TGCTGGAACAAGAAGATAGCAAAAGGGAAACTGACCCTTGAAATCTTTAC
AATTGTAGACCAGCTCTGTTTCTAGTAAAATGAGGGGGGTGGGGGGAAAT
GTTGTTTTACTAGACTAGTGTATATGGTAGGTAAATTAAGTGTATGGAAG
GNTCTTTAATGTTTTCACATTCACAAATAAAATGGTATTTTCTCCTTTTA
TGTTATTGTCATGCTGGGAACTGATTACCCCTTTCCTCTGGGCGAGCACG
ACCCTGGGAAGCTGATAGAGTCCATGGCAGAGTTTGATGAAGAAACAAAG
GTACGTGCCTTGGCTCCAGCCAGCCCATCCTGAGCTGAACACACACTTGA
TTTTCCTAAAACTATGACTCCACTTTCTGAAATAGCTAGACTATTAAAAA
CAAACGCTATAATATCTTAAAATAAGTGCAATATAACTAGATGTATAAAT
CCTCTGTCCTCACAAGTGTATGTTCACCCTGCATGTTCATAAACACGCGC
TAAATGTTAAAAAAAAAATCAATGATGAAATCTAATAAGGGCTTTATCAA
GCCATCATGCTTTTTTATAAAGGTCTCCCACCCCCTCTCTTTTTCTTTCT
TTTCAAGATAAACTTAAAGGTGGCAATGCCCTGGCTTTTTTGTTTTTTGT
TAAGAAAATAATTTGTCGGGAGGAAATAAGACATCCTATCAAAATTTTCG
AAAAGAACATTTTTTTCTGTTTTTAAAATAGAATTATATCACCTTCTATT
TTGAATATTTGTCCCCCAAAAAGGAAGTACCCCCCCCCGCTCTAAGTTGA
GATTCATAAATCTCTTTTTTAATAGATTATGTGAATACGTAGTATAGTCT
ATTAAATGGTGGGGGTAAAATTTCTTCTATTTTCTTTTTTTACAACAAAG
TTTTAAAAATTTCATTTTTTTCGCACTATTCTTAGAGAGTATATATATAA
TTTAATNAATCACTATCTTTTTTCATGATGATTTAACATTGTAAGTAACT
ACTTTACTAATACCTGTATATATTTTATTATCT

NCCGTTTATTTTTNNCCCCAGGNTAGCTGGGGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTATAAAGACCCCTCTGCCTAC
ATGAGACCTAATTCAACCTTCCACTTTCTACTCAATATCAAAAGACAACA
ACATTTCTGTCCTAGTTGGGTTTCTGTTGCCATGGCAATGCTAACCAAAA
CCAACTAAAGGAAAGGGTTTATCTTATAACTTTCAAGTCAAGACCATCGC
TGAGGGAAGTCAGAACAGATACTCAGGAGAACTTAGAGGCAGGAACTGAA
GCTAACACTTAGGCTATGGAGGAAGGTTCTTTGCTGCTTGCTCTCCATGC
CTTGCTCAGCCTGCTTCTTTATACAACCTGCTAGAGATAGTGTCATCCAA
TGTTTTTCCTGACATCAATCATTAACTAAGAAAATGTCCTATGGACTTGC
CTACAGGATAGTCTGATGGAGGCAATTCCTCCAGTGAGATTTCCTCTTCC
CAGGTGTCTCGTTTGTCTCACATTGACAAACATTAATCAGGACAATATTG
ATTATTCTATGAACATATAATACAAATGGTTCCATTTATTAATTTAATTA
TTGTATGTGAACCCATGATACATCAAGTGAAGGGAATTACATAAAATAAT
CACATGCAATGCTGGTGAGGATACACATCCATCCTATCGATCACTACATA
CTTACTTTATGCTTATACACTTTATACTTACATACTTCTACACTTATATA
CTTAGCTTATGCTTGTACACTTAGTTTATACTTATATACTTATACACTTA
GAGACTTAACCCTTAGTTTAATAATAGCTACTAAAACATTTCAAGATATA
AAACCAGTCAATTACATTGACAAATGCTTAGGTTCATCAAAAGTCGAGGA
AATAGCCAGGCATGGTAAGGCATACCTTTTATTCCACCACTTGGGAAAAA
AAAGCCAACAAATCCTCTTTAGATTTGGAAAACCCTTTCTTCAAAATGGG
GTAAAGGATTTTCTAACCAAAAAGGCTTCTTAGGAAATCTTTTTTTAATT
AAAATGATAGATTATCTAATTCTTGATATATAATAAATTCTTTTATTACT
TGTGGGTTGTTNNCTTCTCCCCCCTCCCTCCCAGTATTTGACATCACCCA
TTTTTAAAATCCATCCATAATCTATTCTTTCTTGTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_e11.b1 MSMg01no323_e11.b1 CHROMAT_FILE:
MSMg01no323_e11.b1 PHD_FILE: MSMg01no323_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:39 2005
         (276 letters)



>mm_chr1_129661981_129662656
          Length = 676

 Score =  518 bits (268), Expect = e-151
 Identities = 273/275 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctccttactcaagcacactcagaagccagactagccctagatttgcaatttttagaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctccttactcaagcacactcagaagccagactagccctagatttgcaatttttagaaga 260

                                                                       
Query: 61  cctaatagtgacacctgctggaacaagaagatagcaaaagggaaactgacccttgaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaatagtgacacctgctggaacaagaagatagcaaaagggaaactgacccttgaaatc 320

                                                                       
Query: 121 tttacaattgtagaccagctctgtttctagtaaaatgaggggggtggggggaaatgttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tttacaattgtagaccagctctgtttctagtaaaatgaggggggtagggggaaatgttgt 380

                                                                       
Query: 181 tttactagactagtgtatatggtaggtaaattaagtgtatggaaggntctttaatgtttt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tttactagactagtgtatatggtaggtaaattaagtgtatggaaggctctttaatgtttt 440

                                              
Query: 241 cacattcacaaataaaatggtattttctcctttta 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 441 cacattcacaaataaaatggtattttctcctttta 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no323_e11.g1 MSMg01no323_e11.g1 CHROMAT_FILE:
MSMg01no323_e11.g1 PHD_FILE: MSMg01no323_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:39 2005
         (720 letters)



>mm_chr1_129829134_129830253
          Length = 1120

 Score =  872 bits (451), Expect = 0.0
 Identities = 463/467 (99%)
 Strand = Plus / Minus

                                                                        
Query: 254  ccatgccttgctcagcctgcttctttatacaacctgctagagatagtgtcatccaatgtt 313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 1120 ccatgccttgctcagcctgcttctttatacaacctgctagagatagtgtcatccaatggg 1061

                                                                        
Query: 314  tttcctgacatcaatcattaactaagaaaatgtcctatggacttgcctacaggatagtct 373
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 1060 tttcctgacatcaatcattaactaagaaaatgtcctatggacttgtctacaggctagtct 1001

                                                                        
Query: 374  gatggaggcaattcctccagtgagatttcctcttcccaggtgtctcgtttgtctcacatt 433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 gatggaggcaattcctccagtgagatttcctcttcccaggtgtctcgtttgtctcacatt 941

                                                                        
Query: 434  gacaaacattaatcaggacaatattgattattctatgaacatataatacaaatggttcca 493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  gacaaacattaatcaggacaatattgattattctatgaacatataatacaaatggttcca 881

                                                                        
Query: 494  tttattaatttaattattgtatgtgaacccatgatacatcaagtgaagggaattacataa 553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  tttattaatttaattattgtatgtgaacccatgatacatcaagtgaagggaattacataa 821

                                                                        
Query: 554  aataatcacatgcaatgctggtgaggatacacatccatcctatcgatcactacatactta 613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  aataatcacatgcaatgctggtgaggatacacatccatcctatcgatcactacatactta 761

                                                                        
Query: 614  ctttatgcttatacactttatacttacatacttctacacttatatacttagcttatgctt 673
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  ctttatgcttatacactttatacttacatacttctacacttatatacttagcttatgctt 701

                                                           
Query: 674  gtacacttagtttatacttatatacttatacacttagagacttaacc 720
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  gtacacttagtttatacttatatacttatacacttagagacttaacc 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1120
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1110
Effective search space:   788100
Effective search space used:   788100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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