BAC Information

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BAC

Clone NameMSMg01-323G04
Chromosome1 (Build37)
Map Location 5,531,649 - 5,532,018
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659
Downstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323G04.T7 (MSMg01no323_g04.b1)MSMg01-323G04.TJ (MSMg01no323_g04.g1)
ACCAG441822AG441823
length1,1171,238
length of high quality
(start - end)
671 (135 - 805)371 (417 - 787)
definitionCHROMAT_FILE: MSMg01no323_g04.b1 PHD_FILE: MSMg01no323_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:52 2005CHROMAT_FILE: MSMg01no323_g04.g1 PHD_FILE: MSMg01no323_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTATCCNNNNNNNNAGTCACTGGGCGCTAXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGTGACAAGGTTACCTACTCTAAAACCCTCAAATTT
ACTTCTAGTAGAGATTAATTCTTGAAACTAATTAGGCATTACAAAGAACA
GAGCCGGAATAGCTCATGGCTATTCTGCAGAGTGTTTACTTGGGACAATA
GCCAATCGTACCCAGACAAGGGAATTCACAATGGCTTAGTGAATAGGTGG
GTTTACCATGAAAGAGTTAGGGAATCCCCCTGAGAAAGGTTTCTTCACTA
GGCTCAAAGAAACAGCATAAATCAGGCATTTACTAAGAACCCCTGGTGGT
GGGCTTAACAATAGACTAGCATTACACCTGGCTCCCTTCTTAGTGGCAGC
AGCCTGGTCTCTGCCTTCTTTTGATGCATACATTCCTTATGTTTTGTGTC
ACTGTAACTCAGAGGATGTATTTCACCTGTTTCTTGTTGCTCTTCTGTAT
AAAAAGTTAGATGCTCAACTTGAAAAATTACATTCAGATTCTACACAATC
TCCTGTGTTGCATATATTTGTCATTCATTCGCCGACTCCTTGTCCATCTG
CAACCAGAGACCCGTTCTATGCAGACAGGGAACAAAAGGGTCTGCAGCAC
CCAGAAACTTAGAATACCCAAAATACAATTTGCAAAACACAAGAAAATCA
AGAAGAAGGAAGACCAGCGTGTGGATACTTCATTTCTCCTTAGAATAGGG
AACAAAATACCCATGGAAGAACTTACAGAAATAAAGTTTGGAGCAAAGAT
GAAAGGATGGACCACCCAGAGACTACCCCATCTGGGGATCCCTCCCATAA
TCAGCCACCAAACACAGACACTATTGCATATGCCAGCAAGATTTTGCTGA
AAGGACCCTGATATAGCTGTCTCATGTGAAGCTTTGCCCGTGCCTGGCAA
ATACCGAAGTGGATGCTCCATCTTGGAATGGAACCACAGGGCCCCCCATT
GGAAGGACCTAGAAAAAATGGCCCCAAGGAACCCGAAAGGGTTCTGCCAA
CCCCTATTGTGGGGGGCCCACAAATGTTGGAACTAACCCGGTAACCCCTC
CAAAGCTTTGGGTCTTN
NCCCACCTTNNNNNTTTCATGCTAGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCATAAAGAGCCAGAGCTCTGGC
CNANCACNAGGNNNCCTCCTTTAAAACCTCTCCGCTCCTTACTTGCTGAT
TGGCTTAATAAAAATCTGGTGGCCAAAGGCTAGGTAGGAATGGGAAGGCA
GAACTTCCATGCCCAGAGATGTCTCTACTAGAAGAAGAGAAGTGGAGATA
TGCCATCTGGGCATGGAGGTGGTTGCTCATGAATAGGAGCAAAGAGGTAA
AGAACTAGCTATGTGGCAGAACTTAGGGTTAAAAGAGCTAGAAGAGCTAG
ATAGATAGAGCTAGCTGAGGGTCTGCCCCACAATATTTGACATCCAACTT
GGTGGCATTTTTTTTAGTTTAAGACACTACATTTAAGCAGTAGAACCCAG
GCACAGAATCAGCAGTCAGCCATGTCTTGCTCTATGAGCAATGTGTGGCA
AAAAAACAAAGAGAAGCTGATAAGTGGCCCACAGGGTGGAAGGCAGAGAA
AGTAGAGCCCTGGCTGTAGTCTGTGAGAACACAGGAGGTAAAACAAGCAC
TTCCCAGAGCTAGGCTACAGCTTATCAAAGCAGATTTAAATGAGCTGAGC
ATTGAGAAGTAGAATGCTAGGATACAACAGTACAACAAGGATGTTCCTTT
AAATCGGCATAAATACTCTGCAGAGGAATCCAATCTAGAACCTACAGTGC
CACCTCATGATGAGATTGCAAAATGCCATTTCAGGCCCATTAGAAAGCCC
AGGATTATTTTTTCAGTTGCGATAAGAGATTAGACTCCACAAGGGCTTGA
GAAAATTGGGTGAAAGCCCCTAGAGACACTAGACTTAAAGAGATTTGAAG
GGACCATAATGTTTTTATGCCATGATTTTAATGTATGGCAAGCAGATACT
TTATTAAGTAGCCCCCCAAAATCCTATAATTCCAAGAATGGAGATATTTG
ATGCCGCCCTTCTTAAACATGGCCCCTCCCTTAAAGGTGTAAAAGGAGGC
TTCCATTTTGGGACCATGGAATAGGGCCAAAGGGTATTAATTTTGCCCGG
AAACGGTTGCTAGGGTAAAGGCCAGAATTCTTAATTAAAAAAACGCGACC
CGTGTTTAAGGAAACCTCCCTTAAAACAGGGGCCTAAAAAGCATTTTTTG
CCCCCTTTGTGCCAGTTGGAAGTATCAAAAATAGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_g04.g1 MSMg01no323_g04.g1 CHROMAT_FILE:
MSMg01no323_g04.g1 PHD_FILE: MSMg01no323_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:52 2005
         (371 letters)



>mm_chr1_5531449_5532218
          Length = 770

 Score =  650 bits (336), Expect = 0.0
 Identities = 363/372 (97%), Gaps = 3/372 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttaagacactacatttaagcagtagaacccaggcacagaatcagcagtcagccatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gtttaagacactacatttaagcagtagaacccaggcacagaatcagcagtcagccatgtc 511

                                                                       
Query: 61  ttgctctatgagcaatgtgtggcaaaaaaacaaagagaagctgataagtggcccacaggg 120
           ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 510 ttgctctatgagcaatgtgtggc-aaaaaacaaagagaagctgagaagtggcccacaggg 452

                                                                       
Query: 121 tggaaggcagagaaagtagagccctggctgtagtctgtgagaacacaggaggtaaaacaa 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 451 tggaaggcagagaaagtagagccctggctgcagtctgtgagaacacaggaggtaaaacaa 392

                                                                       
Query: 181 gcacttcccagagctag-gctacagcttatcaaagcagatttaaatgagctgagcattga 239
           ||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 391 gcacttcccagagct-gtgctacagcttataaaagcagatttaaatgagctgagcattga 333

                                                                       
Query: 240 gaagtagaatgctaggatacaacagtacaacaaggatgttcctttaaatcggcataaata 299
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 332 gaagtagaatgctaggatacaacagtacaacaaggatgatcctttaaatcggcataaata 273

                                                                       
Query: 300 ctctgcagaggaatccaatctagaacctacagtgccacctcatgatgagattgcaaaatg 359
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctctgcagaggaatgtaatctagaacctacagtgccacctcatgatgagattgcaaaatg 213

                       
Query: 360 ccatttcaggcc 371
           ||||||||||||
Sbjct: 212 ccatttcaggcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 770
Length adjustment: 9
Effective length of query: 362
Effective length of database: 761
Effective search space:   275482
Effective search space used:   275482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)