Query= MSMg01no323_m15.b1 MSMg01no323_m15.b1 CHROMAT_FILE:
MSMg01no323_m15.b1 PHD_FILE: MSMg01no323_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:44 2005
(600 letters)
>mm_chr1_30182827_30183826
Length = 1000
Score = 1145 bits (592), Expect = 0.0
Identities = 598/600 (99%)
Strand = Plus / Minus
Query: 1 ttttcttcattaagcctgccaaaagcatatttgcaaaatatcatcttcattttctaaaac 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 639 ttttcttcattaagcctgccaaaagcatatttgcaaaatatcatattcattttctaaaac 580
Query: 61 tttcagaaatcaaagctgttttgaatggactataaaatcctatgttatgtatgtttttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tttcagaaatcaaagctgttttgaatggactataaaatcctatgttatgtatgtttttat 520
Query: 121 gacaacattgattccatgcttagattttctgctctcatatattttaatgtgtttacttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gacaacattgattccatgcttagattttctgctctcatatattttaatgtgtttacttga 460
Query: 181 tttataggaattactaagtataataggatagaggagaaggcactaggaagatgtttcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tttataggaattactaagtataataggatagaggagaaggcactaggaagatgtttcttg 400
Query: 241 ctaaacagaaattatactgctagagcttacctgataggagtaatttggatactggcatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctaaacagaaattatactgctagagcttacctgataggagtaatttggatactggcatct 340
Query: 301 cttgaaagacatgcagcaaccgattcaaccttaacattaatttgcagttaatgttaatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cttgaaagacatgcagcaaccgattcaaccttaacattaatttgcagttaatgttaatac 280
Query: 361 atctcaaccccaacatgtcatttgtgagccacatggtggatagttatatgtgtttctgac 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 279 atctcaaccccaacatgtcatttgtgagccacatggtagatagttatatgtgtttctgac 220
Query: 421 atgctggacagacaatttacatattttttaaatccattatttggttgagaaacatgtagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 atgctggacagacaatttacatattttttaaatccattatttggttgagaaacatgtagg 160
Query: 481 ttgataacagtttctgtctattaagaagaaaactgctaagaacagagttgatcaaaagtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ttgataacagtttctgtctattaagaagaaaactgctaagaacagagttgatcaaaagtc 100
Query: 541 tttgtggtaggatagaacatcctttgggtatatacccaagagtgggatagctttaatgtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 tttgtggtaggatagaacatcctttgggtatatacccaagagtgggatagctttaatgtt 40
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_m15.g1 MSMg01no323_m15.g1 CHROMAT_FILE:
MSMg01no323_m15.g1 PHD_FILE: MSMg01no323_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:44 2005
(677 letters)
>mm_chr1_30158385_30159461
Length = 1077
Score = 416 bits (215), Expect = e-120
Identities = 296/349 (84%), Gaps = 42/349 (12%)
Strand = Plus / Plus
Query: 6 caaagtgttcaattagattcctgttgtgaactcccttcctagttttcatcctactcctgt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 caaagtgttcaattagattcctgttgtgaactcccttcctagttttcatcctactcctgt 297
Query: 66 tttgcctgtcctgctttaggagagagagagaaaaacagagagagacagagagagagagag 125
||||||||||||||||||| ||||||| ||
Sbjct: 298 tttgcctgtcctgctttag------gagagaa--------------------------ag 325
Query: 126 agagagagagagagagagagagagagagagagagagagagagagagagccaagtgaatgg 185
||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 326 agagaaagacagacagagagagagagagagagagagagagagagagcgccaagtgaatgg 385
Query: 186 aggacagagacaaaataagccctttagattctcagattcttcctcttttcctcttcttat 245
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aggacagagacaaaatatgccctttagattctcagattcttcctcttttcctcttcttat 445
Query: 246 atgggcatggcatatgccatttaggaatcaattcttatctccatgaa----------tct 295
||||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct: 446 atgggcatggcgtgtgccatttaggaatcaattcttatctccatgaaagtctttctatct 505
Query: 296 ccacatatgaccaacttcgcttctggaatttcagtagatgatctggtgt 344
|||||||||||||| || | ||||||||||||||||||||| |||||||
Sbjct: 506 ccacatatgaccaaattggtttctggaatttcagtagatgaactggtgt 554
Score = 252 bits (130), Expect = 9e-71
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 338 ctggtgtacatcacaatcagcacacattatttctctatctgctttcaactgaggaataca 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 ctggtgtacatcacaatcagcacacattatttctctatctgctttcaactgaggaataca 1007
Query: 398 gaatggctgagaagcacatgaaaaagtgttcaacatccttaatcatcagggaaatgcaaa 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 gaatggctgagaagcacatgaaaaagtgttcaacatccttaatcatcagggaaatgcaaa 1067
Query: 458 tcaaaacaac 467
||||||||||
Sbjct: 1068 tcaaaacaac 1077
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 2
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
