BAC Information

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BAC

Clone NameMSMg01-323M23
Chromosome1 (Build37)
Map Location 81,087,785 - 81,088,472
singlet/doubletsinglet
Overlap gene9430031J16Rik
Upstream geneLOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092
Downstream geneEG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323M23.T7 (MSMg01no323_m23.b1)MSMg01-323M23.TJ (MSMg01no323_m23.g1)
ACCAG442126AG442127
length1,1331,112
length of high quality
(start - end)
688 (130 - 817)657 (122 - 778)
definitionCHROMAT_FILE: MSMg01no323_m23.b1 PHD_FILE: MSMg01no323_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:47 2005CHROMAT_FILE: MSMg01no323_m23.g1 PHD_FILE: MSMg01no323_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTTTTNNNNNNNCTCAGTGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCTAGAACCCTGTTGTCCTTTAAGTGTGNACAATGGNCT
TTTGATTACTCATCATCCTCAGTGAATGTTGATATTTGGTGACCTAACAA
GGGGTTACGTACAAACAGAGGACCTCTGAAGAAATCATGTTTTAGAGGTG
TGTGCAGATGCTGTCCTCCAGGTCAGCTCTCATTCATCACCTCCTTCATT
CTTACTGGCCAGAACTGCACACATTGACCACCAAAGTTTGTTCCTCACCT
TTCCCCCTATTTGTGACCATTTAGGACATGGTGACTCATCTAGAATAGAC
TAACTTGTTGAAAGGTAGTTTTTCATGTTTGATTGGTTTATGGGCTATGT
AATAAAAACAAATTTCATTTGCCAGTGCCTATACAAAGCTACTGGGATTT
AAAATAACATTAGACCATGAGGCCCCAAAATAATTGTTTTCTTTCTCCAT
TAATTCTCTCCTTTAAGCATTTCTCAGTTTCTTACCAAATATGACTTTAA
GCTGTTAAGAGAAGCACTAGAAACATCATTTCTTTTTCTTTATTTAGTAT
CTCTTTCTCACCAGCAAGTCTCTTCAGTAAAAAGCCCATATGACAGATAG
AAGAGAAGATACAAAGAGTTAATAGTGACAGGGGCTCAAGTTGGTTCAAA
AATAAGGAACTGAGCTCAGAAACCCTAAGTATCTCAGATCACAGAGCAAG
CAGGGGGATGGATATTGTTTGTCTAAGGGTTCTGTGTTTAAGCTCCCCAG
CTTGAGCACAAAAGGCATTTCAGCGGTCTGTGCTCCAGAAAGTCAATCAG
AGGAAATCCGATTTCCATGTTTTAAGCATGCCTTGGCAGTCTGCACATTT
TTGAAATTTGCACTGCCGCACTTCACAGAGAATTATCATCCATGCCTTTT
TCAGGTTCAAATGTGCTTGCTTTTTAAAATTTTCTGGCATGTATATCCCC
ATATATTAAATTCCCGAAATATTATTTTGAAGAACTTTTCCCCAAAAAAA
TGAAAAAAATTTTTCCTTAATTTTGAAGGGGGGTTAATTAAAAACCTTTG
GTGAAAGATTTTCTCCAATCTTGAAAATTAAAT
NCCCCGTCTTTNNNNCCTGAAGTGATGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATTAAGTGTTCAGNTCTGAGCC
CCATTTTTAAATGTGGCTATTTGATTTTCTGAAGTCCACCTTCTTGAGCT
CTCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATACTGGC
GAGGATGTTGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGG
CTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGA
CATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAG
AAGATGTCCCAACTGGTAAGAAGGACTCATGCTCCACTATGTTCATAGCA
TCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAAC
AGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAATACTACT
CAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGAC
CTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACA
CAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCC
AAGATATAAGATACAATTTGCTAAACACATGCAACTCAAGAAGAATGAAG
ACTGAAGTGTGGACACTATGCCCCTCCTTAGAATTGGGAACAAAACACCC
ATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGAC
CATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCAAA
CACTGACACCATTGCATACACTAGCAAGATTTTATTTGAAGGACCCAGAT
GTACCTACCTCTTGTGAGACTATGCCGGGGCATAGCAAACACATAAGTGG
ATGCTCACAGTCAGCTATTGGATGGATCCCAGGGTTCCCATTGGAGGAGC
TAGAAAAAGACCCCAGGGAGCTAAGGGGATCTGCAACCCTATTAGGGGGA
ACCGGAGAACCATTATGAACTTACCCGGGACCCCGAAAATCTTGAATCTT
AACGGCAAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_m23.b1 MSMg01no323_m23.b1 CHROMAT_FILE:
MSMg01no323_m23.b1 PHD_FILE: MSMg01no323_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:47 2005
         (688 letters)



>mm_chr1_81087585_81088672
          Length = 1088

 Score = 1315 bits (680), Expect = 0.0
 Identities = 686/688 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatatttggtgacctaacaaggggttacgtacaaacagaggacctctgaagaaatcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tgatatttggtgacctaacaaggggttacgtacaaacagaggacctctgaagaaatcatg 829

                                                                       
Query: 61  ttttagaggtgtgtgcagatgctgtcctccaggtcagctctcattcatcacctccttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ttttagaggtgtgtgcagatgctgtcctccaggtcagctctcattcatcacctccttcat 769

                                                                       
Query: 121 tcttactggccagaactgcacacattgaccaccaaagtttgttcctcacctttcccccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tcttactggccagaactgcacacattgaccaccaaagtttgttcctcacctttcccccta 709

                                                                       
Query: 181 tttgtgaccatttaggacatggtgactcatctagaatagactaacttgttgaaaggtagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tttgtgaccatttaggacatggtgactcatctagaatagactaacttgttgaaaggtagt 649

                                                                       
Query: 241 ttttcatgtttgattggtttatgggctatgtaataaaaacaaatttcatttgccagtgcc 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 648 ttttcatgtttgattggtttatgggctatggaataaaaacaaatttcatttgccagtgcc 589

                                                                       
Query: 301 tatacaaagctactgggatttaaaataacattagaccatgaggccccaaaataattgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tatacaaagctactgggatttaaaataacattagaccatgaggccccaaaataattgttt 529

                                                                       
Query: 361 tctttctccattaattctctcctttaagcatttctcagtttcttaccaaatatgacttta 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tccttctccattaattctctcctttaagcatttctcagtttcttaccaaatatgacttta 469

                                                                       
Query: 421 agctgttaagagaagcactagaaacatcatttctttttctttatttagtatctctttctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agctgttaagagaagcactagaaacatcatttctttttctttatttagtatctctttctc 409

                                                                       
Query: 481 accagcaagtctcttcagtaaaaagcccatatgacagatagaagagaagatacaaagagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 accagcaagtctcttcagtaaaaagcccatatgacagatagaagagaagatacaaagagt 349

                                                                       
Query: 541 taatagtgacaggggctcaagttggttcaaaaataaggaactgagctcagaaaccctaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 taatagtgacaggggctcaagttggttcaaaaataaggaactgagctcagaaaccctaag 289

                                                                       
Query: 601 tatctcagatcacagagcaagcagggggatggatattgtttgtctaagggttctgtgttt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tatctcagatcacagagcaagcagggggatggatattgtttgtctaagggttctgtgttt 229

                                       
Query: 661 aagctccccagcttgagcacaaaaggca 688
           ||||||||||||||||||||||||||||
Sbjct: 228 aagctccccagcttgagcacaaaaggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)