BAC Information

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BAC

Clone NameMSMg01-323N19
Chromosome1 (Build37)
Map Location 108,630,163 - 108,630,634
singlet/doubletsinglet
Overlap geneFvt1
Upstream gene2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2, LOC100042085
Downstream geneVps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323N19.T7 (MSMg01no323_n19.b1)MSMg01-323N19.TJ (MSMg01no323_n19.g1)
ACCAG442166AG442167
length1,2901,257
length of high quality
(start - end)
637 (136 - 772)640 (137 - 776)
definitionCHROMAT_FILE: MSMg01no323_n19.b1 PHD_FILE: MSMg01no323_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:54 2005CHROMAT_FILE: MSMg01no323_n19.g1 PHD_FILE: MSMg01no323_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCAAATTANNNNNNNATCAGTGGGCGCTATAGACTCCTAAGGGAGAGGAT
CCGCGGAATTCTCAAACAAAAACAGTAACCATATAGTTTCTGTCTGCACC
CAGACCTGATCCTGTGCTCCCTAAAACCAAGTAGCAACAAGAGAGAGCTG
GTCTCCCAACAGTGCTGTCATACCCATGAGTACAGGGAAGACCACCAATT
CTGCTCAAATTCCTGGCCAAAGAGGGACCCAGCCAGAGCCATCCGGACAC
AGGAACGAAGGAACAGGAAGAAACAATCATTTTTCCTTAATATTTTTTGT
CATCAATGGACTTGATTCCCAATACAAAGACATAGACTAGCAGACTGGAT
ATGTAAACAGGACCCAGCACTTTGCTGCATGCAAAAAAAAAAAAAAAAGG
CACCTCAGTGTCTTATACAGGCACTACCTCAGAGTAAAAGGCTGAAAAGC
AATTTTTCCAAGCATATGATCCCAACAAACAAGATGGAGTAGCCATTCTA
ATATTGATTATAATCAACTTTCAACCAAAAGTTATTTTAAAGAGATAAGG
AAGGACACTTCATACTCATCAAAGGAAAAATCTACCAAGAAGAACTCTAA
ATTCTCTGCTCCAAATGCAAAGACACCCACATTCATAAAAGAAACTTTAC
TAAAGCTCAAAGCACACATTACGCCTCACACAATAATAGTGGGAGACTTC
AACAACCGACTCTCAACAATAGACAGATTGTGGAAACAGAAACTAAACAG
AGACAAGGTGAAACTAACAGAAGTTATGGACCANATGGATTTAACATATA
TCTATAGAACATTTCATCCTAAAACAAAAGAATATACTTTCTTCTCAGCA
CTTCAACCTACCTTCTCCAAACCTGACCACAAAAATGGTCACAAAACAGG
CCTCAACAGATTCAAGAACATTGAAATAATGCTTTTTTGTGACTCATCAG
GTAGGCTATGTTTACTATCCACTTGTACACCCATTAAGGGGGATATAGGA
AATTAATAATGCTAGCAACGGTAAGAAACCCCACTAATTTTCCCCTTCCA
AGTTGTGGGGCCTGGGAACTACAGTTCACTCTTTCTTTTAATTCATAACC
CCCCTTTCTCTTGTTCCCGCCAAATCCCGGTTCCACAGGCAAATTCAAAT
TCCAAAAATGGGTTTAAACGTCCCCTAACCCCTTATAAAAAAAAAAACCA
CCTCTAATAATTTCCTCGCCCCACAAAAAAAAAAAAAAAAACCCTCTCTC
TACACAAAGGGTTTATAATAAAATCTCTTCCAAACACCAA
NCCCGTTTTTNNNNNAACATGCGATGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAACTCCTGTTGNTGNTT
TAAGATTTAAAATTAAAACCTTTATATGTGTGCCCGCCTGCGTGTATGCA
TGTACACCATGTATGTAATGGTACCGTGTCCAAGAAGGCCAGAAAGGGGT
GGGAGTGGAGGCTCATGTGGCTTCTGAAGTGGGGTCCTGTGCTTGTACAA
CTTACCAAGCCACCTCTGCAGACCTGTTCTTTTTTTTAAATGTATATTTA
TTTACTTGTGTATATGTATGTATCACAACATGTATGTAGAGGCCAGAGGA
CAAATGAGGGCGTCAGGTCTCTCCTTCCACTACTGGAGTCTGAAGAACTC
GGGTTATTATTATTGGTGGCAAGTCCCTTTACCCACTGAGCTGTCTCACC
AGGTCTTTGGGTCTGTTGGTGAGGCTGCTGTTACTGTGTCCTGCTAACCT
TGGCACAACACCCCTTTTGCTACTTAGAAGCTGCACCATGTTATCTGGGT
GCAGACTTTCCAAAGTCACGTAGGTTACTAAGTTTACGGACATCCCTCAG
ATTGAACCTTGTTCTACAAGTGAGTTAATCAGAATGTATTCAAAAGAACT
GTGGTATGCAGTGTTCTATATAATGCTTGATATGGTTTCAAAAGCCAGTT
CCCCACAAATTAAGTGTGTGAGGAGGTACATCGAGAGGAACGGTGGGGCC
AGCAGCCTTGTTGTGAACCATGAGAAAGAAAAGTATTAACAGGAAACAGG
AAGGGAAAGAAAAACCCATCCTGAGCCTGGCAATCAATACCTTAGATGGT
CTGAAACCCTGGTAAAGGACAAGGCCAGGCTCAGTGGGCAAACACAGACA
CCAAGCCTAATGACCGGAATTCATTGCCCTTAACTCTCGTGGAAGATGAA
AAAATTTTTCTTGTAAAAGGCAACATTCCACCCCCCCCATAAGTAAAATT
TCCAATAAAAATTTAAAGAAGTTGCCTCTTCTCCGTAAGGGCCTTTGCCT
TTCCAAGAGTTCTACTTTTCTTAAAAACCATGAACCCTTCCCCTGGTTAA
GGGTTAACCCCCCAAAATTTTAAAAATTTTTGTAATTTTTTTCCTAAAAA
CCCCTCAAAAACCCAATCTTTTTTCTTAAAAAATTCCTAATAGCTTTTTT
TAACAACACAAAATATTCCTAAAATAAAATCTCCTCCGTGCTTTTTTTTT
TATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_n19.g1 MSMg01no323_n19.g1 CHROMAT_FILE:
MSMg01no323_n19.g1 PHD_FILE: MSMg01no323_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:54 2005
         (640 letters)



>mm_chr1_108629799_108630834
          Length = 1036

 Score =  866 bits (448), Expect = 0.0
 Identities = 467/476 (98%), Gaps = 6/476 (1%)
 Strand = Plus / Plus

                                                                       
Query: 167 tacttgtgtatatgtatgtatcaca--acatgtatgtagaggccagaggacaaatgaggg 224
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 365 tacttgtgtatatgtatgtatcacacaacatgtatgtagaggccagaggacaaatgaggg 424

                                                                       
Query: 225 cgtcaggtctctccttccactactggagtctgaagaactcgggttattattattggtggc 284
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 425 cgtcaggtctctccttccactactggagtctgaagaactcgggttattaggattggtggc 484

                                                                       
Query: 285 aagtccctttacccactgagctgtctcaccaggtctttgggtctgttggtgaggctgctg 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aagtccctttacccactgagctgtctcaccaggtctttgggtctgttggtgaggctgctg 544

                                                                       
Query: 345 ttactgtgtcctgctaaccttggcacaacaccccttttgctacttagaagctgcaccatg 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttactgtgtcctgctaaccttggcacaacaccccttttgctacttagaagctgcaccatg 604

                                                                       
Query: 405 ttatctgggtgcagactttccaaagtcacgtaggttactaagtttacggacatccctcag 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttatctgggtgcagactttccaaagtcacgtaggttactaagtttacggacatccctcag 664

                                                                       
Query: 465 attgaaccttgttctacaagtgagttaatcagaatgtattcaaaagaactgtggtatgca 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 attgaaccttgttctacaagtgagttaatcagaatgtattcaaaagaactgtggtatgca 724

                                                                       
Query: 525 gtgttctatataatgcttgatatggtttcaaaagccagttccccacaaattaagtgtgtg 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 725 gtgttctatataatgcttgatatggtttcaaaagccagttccccacaaattaagtg---- 780

                                                                   
Query: 585 aggaggtacatcgagaggaacggtggggccagcagccttgttgtgaaccatgagaa 640
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 781 aggaggtacatcgagaggaacggtggggccagcagctttgttgtgaaccatgagaa 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1036
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1026
Effective search space:   646380
Effective search space used:   646380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)