BAC Information

Click to search

BAC

Clone NameMSMg01-323O24
Chromosome1 (Build37)
Map Location 145,652,928 - 145,653,558
singlet/doubletsinglet
Overlap geneUchl5
Upstream geneLOC545369, Cdc73, B3galt2, LOC623138, Glrx2, Trove2
Downstream geneRgs2, Rgs13, Rbm6-ps2, Rgs1, EG639456, Rgs21, Rgs18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323O24.T7 (MSMg01no323_o24.b1)MSMg01-323O24.TJ (MSMg01no323_o24.g1)
ACCAG442217AG442218
length1,0621,200
length of high quality
(start - end)		563 (126 - 688)613 (130 - 742)
definitionCHROMAT_FILE: MSMg01no323_o24.b1 PHD_FILE: MSMg01no323_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:03 2005CHROMAT_FILE: MSMg01no323_o24.g1 PHD_FILE: MSMg01no323_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCAAAAATTTNNNNACTCATTGGNCCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCTCCTAGGAGAGATACCCTTAAAGCCCTTGATTTTAAAATTT
TTAAATGTCAATGCATCAGATAACTGTGAAAATACACTGGATTTTAGAAA
GGACTCTTGAATTGGCATAAATGTGATATCCTCAAAATGGAAAACAAGAA
AGACATTATATTGGGGAAGAGAATATGCTCTTGTTTCAACAGGAAGAGGA
AAGCTCTGGATTTCTTTCAAGTCAGATTATTATTTCTTGATATAAGTCAG
ATATGGCAGAGGGAGACCCGCGAAGATCTTGAGTACAGACAAGAAAAAAA
ATCATGAAAACCAATAACAAGCAACTTGTATACTGCTCCTCCTACATGGG
GGCTCTGAGACTGGCAGAGACATGAGAATGTCACCAGCTAGAACTTCAGC
TATACATAGTGAATAAATCTTATTAGCTACAGAATCCTCAAGACTTAGCA
GGCCTTCTTTCATATGGCATAGATAAAAATATGTGTTACAGTCTGGTCAT
ACAATCCAAACCAACCTATAAAGAAAGATTCTTTCACCTGCTCTAACAAA
GAGCAAAGAATCATCTGTAACTGATTTCTGCACACTGCACATTCCACATT
TATGTTAATGCAAAAACTGTACAATCCCTTTGAAAGTGTGTTTGTTCACA
GAGGAAACAACCAGAAAAGCAAGCCTGACAAGAAACACGTTGAGGATGCT
GAAAAGGATGCTGAAACACTGAAATATATTTATTCCAGAATCCTGCCCGA
ACCCATTTCCAAACTGCCTTAANTACCTTTTTCATCCAAAATCTGGCTTT
CAGGAACAGCTTCAAAAAAAAAGTTGCCCAACCCCCATTTTGTTGCAAAT
CTTTCTGAAATGGGTTCCAGTCCAGGAACTTTCCTTTTAAACCCTGGCAT
TTTTCTCCTTGCCTTGCAAAAAATTTTGGAAAAAAACAAAATGGCCTAAC
GGGTTTAAGTTTTTTCTTTAAAAAAACCTGGAAACCATTTTACCTCCCCT
TTTTGTGGGGGG

NCCCAATTCNNNNNAATCTGCATGGAGNCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCAATTATGGNTTGTTTT
CAAAGATCAGCAGAATTGCGCCTTACCTGAGAATTTGTTTTATTACTAAA
TTATCATCCGACATTTAAATAGGGACCCCGGTTGGCGTACATATTGAAAA
GCACTGCTTGAGAACAAGTGTCTTTGACATCTATTGAAACTTCACTGTAT
GTTACCTGTGTGACTTTGGTCAACTTTGATAATGCCTATGAGCCTTTTCT
TCTTTACTTTGGTTACTTTAGTAACAAATAGAATTACTGCATTTAATATT
GTAATTATGAGATCATGTTGAAAAACATTTAGGTCTAATAAATTTACTAA
TACTATATACATATATGTACATATATGTACATATGTATACTGATACACAC
ACATATACATATGTATTCTTTTAGTGATATTTTATTAAGCTCATCAGAAC
TATGTTAAATTCATTTACTTCAATATAATGGAAGTATAAATAATTTTATT
AGACTTAGTTTGAGTAAGAAATGGACAAATATGTATGGTTGTTTAGCTTT
ATAGAATGAATATATTTTAATTATTATAATCAGTACATTTGATCTTCTGT
AAACCAAAAATGATCATCTCTACTGAGGGTAAATAAGCTTACGGTTCAGC
AGAAGTTGCAAGTCTCAAGTTATAAACTGCCATGCTCTCAGTGTCTCAGA
ACACACTCGGGTATTTCAGTGCTTTTCATTTGTTTATTCAGTGATACCTT
TCCTTTCTGTGTTGCCAGGCCGGCTGCTCTCTTACTTCACAGTGTCAGTA
ACTAGGACTACAGTCCCCTCACCCAGGCTCTAGTAGCGTGAACGATGCAT
AAGCCTTATCCTTGCGAATACCATTGGATAACTTGGACCTTAGAATGATC
TAAAACAGTCTTTTGAGGAATTCAAAAAGGGCCGGCCTTTAATTTTTAGG
CCAAAAAAAAACCCGAATTGCCAAGAAAGCTTCTGGAAATTATAGTGGAA
AAAGAATTTTTTGGAACGGGGGGAAAAAAGGGGGTGGGCCCTTTATTTTT
TTGGGGAACCCCCTTTAAATATAAAAGGAAATTTTGGTTAAAACACCCTT
ATATTTTATCCCTCTCGCCCCCTTTTGTCGAATAAAAAAACAACCTCGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_o24.g1 MSMg01no323_o24.g1 CHROMAT_FILE:
MSMg01no323_o24.g1 PHD_FILE: MSMg01no323_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:04 2005
         (613 letters)



>mm_chr1_145652746_145653758
          Length = 1013

 Score = 1143 bits (591), Expect = 0.0
 Identities = 613/631 (97%), Gaps = 18/631 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatttgttttattactaaattatcatccgacatttaaatagggaccccggttggcgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 agaatttgttttattactaaattatcatccgacatttaaatagggaccccggttggcgta 242

                                                                       
Query: 61  catattgaaaagcactgcttgagaacaagtgtctttgacatctattgaaacttcactgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 catattgaaaagcactgcttgagaacaagtgtctttgacatctattgaaacttcactgta 302

                                                                       
Query: 121 tgttacctgtgtgactttggtcaactttgataatgcctatgagccttttcttctttactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgttacctgtgtgactttggtcaactttgataatgcctatgagccttttcttctttactt 362

                                                                       
Query: 181 tggttactttagtaacaaatagaattactgcatttaatattgtaattatgagatcatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tggttactttagtaacaaatagaattactgcatttaatattgtaattatgagatcatgtt 422

                                                                       
Query: 241 gaaaaacatttaggtctaataaatttactaatactatatacatatatgtacatatat--- 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 423 gaaaaacatttaggtctaataaatttactaatactatatacatatatgtacatatattac 482

                                                                       
Query: 298 -------------gtacatat--gtatactgatacacacacatatacatatgtattcttt 342
                        ||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 483 tatatacatatatgtacatatatgtatactgatacacacacatatacatatgtattcttt 542

                                                                       
Query: 343 tagtgatattttattaagctcatcagaactatgttaaattcatttacttcaatataatgg 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tagtgatattttattaagctcatcagaactatgttaaattcatttacttcaatataatgg 602

                                                                       
Query: 403 aagtataaataattttattagacttagtttgagtaagaaatggacaaatatgtatggttg 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aagtataaataattttattagacttagtttgagtaagaaatggacaaatatgtatggttg 662

                                                                       
Query: 463 tttagctttatagaatgaatatattttaattattataatcagtacatttgatcttctgta 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tttagctttatagaatgaatatattttaattattataatcagtacatttgatcttctgta 722

                                                                       
Query: 523 aaccaaaaatgatcatctctactgagggtaaataagcttacggttcagcagaagttgcaa 582
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 aaccaaaaatgatcatctctactgagggtaaataagcttacggttcagcagaagttgcaa 782

                                          
Query: 583 gtctcaagttataaactgccatgctctcagt 613
           |||||||||||||||||||||||||||||||
Sbjct: 783 gtctcaagttataaactgccatgctctcagt 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |