BAC Information

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BAC

Clone NameMSMg01-323P04
Chromosome1 (Build37)
Map Location 191,667,901 - 191,668,541
singlet/doubletsinglet
Overlap genePtpn14
Upstream geneUsh2a, Kctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf, LOC100042438
Downstream geneSmyd2, Prox1, LOC100039394, EG666975, Rps6kc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323P04.T7 (MSMg01no323_p04.b1)MSMg01-323P04.TJ (MSMg01no323_p04.g1)
ACCAG442225AG442226
length1,3381,262
length of high quality
(start - end)
---639 (91 - 729)
definitionCHROMAT_FILE: MSMg01no323_p04.b1 PHD_FILE: MSMg01no323_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:05 2005CHROMAT_FILE: MSMg01no323_p04.g1 PHD_FILE: MSMg01no323_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGAGAGGGGGGNNAAAAGAGACGAGGAGNGAANGGNGNNAGAANNGNGA
GAGAAAAGGGGGGAAAAATGCAGGGANNNGNGNNACCCTTCACGTCCCGC
GGGGNNNGNNGNNNNNNGNGGNNNGNGNNTCTATAAAAAGGGGCCCCCCC
CCGCGNNGGGGGNNGGNNNNNNNGGNNNGNGNNNGGGGGGGNNGGGGGGG
GGGGGGNNGNGCGGGGGGGGGGGGGGNNGGGNGGNGGGNGGGGGGGGNGG
GGGGGGGGGGNGGGNGGGGNGNGGGGNGGGGGNGNGNGNGNNNGGGGNNN
NNNNNNNGGGGGNGGTGNGGGGGNGGGGGNGGGGGGNNNNGGNNNNNNGG
NNNNNNNNNNNNNNNGNNNNNNGGGGGGGGGGGGGGNNGNNGGGGGGGGG
GNGGGNGNNGGNNNGNNNGGGNGGGTTTTGTGTGNGNGNGGNNNNNNGGG
NGNGNTGGGGGGGGGGGGGNCGCCCGGCCGGGGGGGGGGGGGGGGCGGGG
GGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTGGCTGGCGTGGGGGGGGGG
GGGGGGGGGGGGGTGGGGGGGGCGCGGGGCGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGCGCGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGCGGGGGGCGGGGGGGGGGGGGGGGGGGGGCGGGGG
GGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGG
GGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGTGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGCGGTGGGTGGGGGGGGGGGGGGGGGGGCGGGGGGGGGT
GGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGCGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGTGGCGGCGGGGGGGGGGGGGGGGGGGG
GGGGGGGTGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGCGGGC
GCGGGGGGGGGGCGGGGCGGGGGGGGGGGGGGCGGGGGGCGGGCGGGGGG
GGGGTGGCGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGCCGGTGGGCG
GGGCGGGGGGGGGGGGGGGGCGGGCGGCGCGGGTGGGGGGGTGCCGGTCG
GGGGGTGGGGGGGCTGGGCGGGGGGCGGGCGGCGCGTGCGCGGGGGGCGG
GGCGGCGGGCGCGGGCGTCGGTGGGGTGGGGCCGGCGGGCGTNGGGGGGG
GCGGCGGGGCGCGTGCGGGGGGGGGGGGGGGGGGGGGT
NNNGGGTTTTCTTNNAAAGACGTGATGCGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGCCCGTGTGGCTGTTG
CTGATGTCGGTGTGACTGTCTCTGCCTTGTGCCCCTCCCTCTGCCTTGGC
CATCTGGATAGACCTTCTGAGGCTTCCCTGTGAGCTCATTTGCTCATGCA
CTGATCGCCACTCTCTCCATTGTTAACACTGTCTTCCTTTTGTCTGCATC
TTGTTTTTGTCAGTGAGATCAAGTGTCATTTGTACCTGTGAACTTTAATG
ACAGACCCCATTTTCTCAGGCAATCTTGGGATTACAGAACCTCCCTTTTT
TACTGGGATGAGGTGGTCTACAGCGGTCTGGATGCTGAAGTCTCTCTTCA
CCCTGCCCTGTAGGTCTGAAGAAACCACAGAGTCTTACTGGTCCTTGCTG
ATGAGCATCCTGACTTCCTTGCCAATCTGTCTTTCTCTCTCTTTTACAAT
GCTTGTTTTGTTGGCTTTTTTTTGGGGGGGGGTCAAGTTGACACAGACCC
TGGTTATACCTGATATACAGAGTCTCATTTGAAGACTTGCCTCCATCACA
TTGGCTTGGGCCTGTCTGCAGGGCATTTTCTACATTGCTAATTGATGTAG
GAAGGTCTAACCCACTGTGGGCGGTGCCATTTTGGGCAGGTGAATCTGGG
CTATATAAGAACGGTAGCTGAGCAAGCCCAGGCAAGCCAGGAAGCAGTGT
TCCGCCATGGTCTCTGTCTCAAGCTCCTGCCTTGAGTTCCTGCCTTCATC
TCCTCAGNGGACTGTGACCTGTAAGCAAACAAATACTTCTTTCCCCCAAG
TTGCTTTCGGTCATGGTGTTTTTATCCCCGCATTAGAAACCCCACTACAA
CATTTGTGTTGTGGCATTTATTTCCTGAAAGGCTAAACCTGCAAAAAATT
TTTCCTCAATAAACTACCCCCACAATTAAAATTTCTCAACTAATGGGCCC
TTTCCAAAATTTGGTAAAAAAATTTTTCCCACCTTTAAAGCGGGCCCCTT
TGAATTCTCTCACACACCCCCCTCCTGCCCCAAAAACCAAATAAAGTCCC
TAATCTCCCTCTTTTGTTTTTTTCTTGAACTCACCACCACCTCTTAACCA
CCTTTCTTTTCTTTTTTCACAACAATCGCTCGCTCGTCCTATTCCTTTNC
CTACTCCTTTTTCCCCTCTCTCCACCCTCCTCCCCAACCTNCACACCNCA
TCGCTCTCGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_p04.g1 MSMg01no323_p04.g1 CHROMAT_FILE:
MSMg01no323_p04.g1 PHD_FILE: MSMg01no323_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:05 2005
         (639 letters)



>mm_chr1_191667701_191668740
          Length = 1040

 Score = 1197 bits (619), Expect = 0.0
 Identities = 635/641 (99%), Gaps = 2/641 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggctgttgctgatgtcggtgtgactgtctctgccttgtgcccctccctctgccttggc 60
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 201 gtggctgttgctgatgtcggtgtgactgtctctgccttgtggtcctccctctgccttggc 260

                                                                       
Query: 61  catctggatagaccttctgaggcttccctgtgagctcatttgctcatgcactgatcgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctggatagaccttctgaggcttccctgtgagctcatttgctcatgcactgatcgcca 320

                                                                       
Query: 121 ctctctccattgttaacactgtcttccttttgtctgcatcttgtttttgtcagtgagatc 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctctccattgttaacattgtcttccttttgtctgcatcttgtttttgtcagtgagatc 380

                                                                       
Query: 181 aagtgtcatttgtacctgtgaactttaatgacagaccccattttctcaggcaatcttggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtgtcatttgtacctgtgaactttaatgacagaccccattttctcaggcaatcttggg 440

                                                                       
Query: 241 attacagaacctcccttttttactgggatgaggtggtctacagcggtctggatgctgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attacagaacctcccttttttactgggatgaggtggtctacagcggtctggatgctgaag 500

                                                                       
Query: 301 tctctcttcaccctgccctgtaggtctgaagaaaccacagagtcttactggtccttgctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctctcttcaccctgccctgtaggtctgaagaaaccacagagtcttactggtccttgctg 560

                                                                       
Query: 361 atgagcatcctgacttccttgccaatctgtctttctctctcttttacaatgcttgttttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgagcatcctgacttccttgccaatctgtctttctctctcttttacaatgcttgttttg 620

                                                                       
Query: 421 ttggctttttttt--gggggggggtcaagttgacacagaccctggttatacctgatatac 478
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggctttttttttggggggggggtcaagttgacacagaccctggttatacctgatatac 680

                                                                       
Query: 479 agagtctcatttgaagacttgcctccatcacattggcttgggcctgtctgcagggcattt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagtctcatttgaagacttgcctccatcacattggcttgggcctgtctgcagggcattt 740

                                                                       
Query: 539 tctacattgctaattgatgtaggaaggtctaacccactgtgggcggtgccattttgggca 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctacattgctaattgatgtaggaaggtctaacccactgtgggcggtgccattttgggca 800

                                                    
Query: 599 ggtgaatctgggctatataagaacggtagctgagcaagccc 639
           |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggtggatctgggctatataagaacggtagctgagcaagccc 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1040
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1030
Effective search space:   647870
Effective search space used:   647870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)