BAC Information

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BAC

Clone NameMSMg01-324A19
Chromosome1 (Build37)
Map Location 121,003,077 - 121,185,169
singlet/doubletdoublet
Overlap geneLOC666838, LOC100041778
Upstream geneLOC637083, Tsn, Mki67ip, Clasp1, Tcfcp2l1, LOC100041753, Gli2
Downstream geneInhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324A19.T7 (MSMg01no324_a19.b1)MSMg01-324A19.TJ (MSMg01no324_a19.g1)
ACCAG442302AG442303
length729723
length of high quality
(start - end)
683 (47 - 729)649 (75 - 723)
definitionCHROMAT_FILE: MSMg01no324_a19.b1 PHD_FILE: MSMg01no324_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:16 2005CHROMAT_FILE: MSMg01no324_a19.g1 PHD_FILE: MSMg01no324_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,003,077 - 121,003,741)(121,184,849 - 121,185,169)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCCTCTCACCGACCCAAGACACAGCTGAAGCCCATTCACTTAG
GCCCCCCTCAGCGTTTCCCGATCTGAATAAATCAAGAGGGAGTCTGTCTG
AAATTTATCTTTGTGGTGTTTACACAGACAGACCTTAAGAAGCTGGTCGA
TACGGTAAACAAGGATAATTAGAATATTTCAGGGGAGAAGGCTGAACATT
CCAAAGCAGATGAGAAGGAATTGGAAACACATCCGCCAGCCCCATCCATC
CCTGGGCGACTCAAGAGAGGGCGGGGAACGGGTGTGTTTATTTAATCTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGCACCA
CAGTGCTGTGTGAAAGTCACACCACAGCTTTAGATGTTGTTCCTCATGAG
GCAGGGTCTCTTACTGGCCACTGTGTATGCCAGGCTATGAGTGCACCACC
TTCGGGGGATCCTCGCGTCTCTGTCGCATCCCGTAGGAGCACTGAGATTA
CAGACATGCACTATTGAGCGTGGTTCTACAAGGATGCTTGGGTATTAAAC
TCTGGTCCTGATGCTCACACGGCAAGCACTTGGCCCAGAGTCATCTCCCC
AGCTTCAACTACCATCTTTGAAATCCTGTTTTATATATGTGTGTGTACAT
GCATGCTATAGTGCATCTATAGAGGAGGC
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTACTGTACCGCTCGCTGAAGGGG
ACTACGTGAGCTGTGACTTGAGACTTGCTGCATGCCATGGTTTTGGGGCT
CTGCTCTGAGAATGCTTGGTCCTGACTCTGCTCTTGGCTTCAAAGATTTT
TAAAATTATTATTTTTAAGATGTCATACAACTCTATACTGTATGTCGAGC
ACATTTACCTCCATTCCCAATTCCTTCTCTGTTCTTACCTCTCTCTCTCC
TCCCATTTGTCCCTGTTGGTTGGTATTAATTGTTAACTTGACACAACTAG
AATCATCTGGAGAGAGAGTTTCAGTTAGGTGTTGTCTAGATCAGATTGTG
GGCAGCTTTTGTGAAGGAGTGTCACGATTCTGTTAACTGATGTGGGTAGA
CCCAACTGTGATGGCTATTCTTGATTGTTAACTTGACCACATCTGGAATT
AACTGAAAACCGAGTGGCTGGGTACACAGGTGAGGGATTTTTTTTCCTCT
TAATTTAAATCTCTTGAAGTGGGATGACCCACTTTTAATCTGGGTCTTTT
AGGGTAGGAAGATACACCTTTAACCCAGACTTTTTGAAGTGGGAAAATCA
CTTTAAGTCTGGGCCACACCTGGTCTCAGCCTCTCTAAAGGACACGGAAG
AAGGAAGCTTTCGCTCTCTGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_a19.b1 MSMg01no324_a19.b1 CHROMAT_FILE:
MSMg01no324_a19.b1 PHD_FILE: MSMg01no324_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:16 2005
         (683 letters)



>mm_chr1_121002873_121003954
          Length = 1082

 Score = 1125 bits (582), Expect = 0.0
 Identities = 649/682 (95%), Gaps = 20/682 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcctctcaccgacccaagacacagctgaagcccattcacttaggcccccctca 64
           |||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcctctca-ggacccaaggcacagctgaagcccattcacttaggcccccctca 263

                                                                       
Query: 65  gcgtttcccgatctgaataaatcaagagggagtctgtctgaaatttatctttgtggtgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcgtttcccgatctgaataaatcaagagggagtctgtctgaaatttatctttgtggtgtt 323

                                                                       
Query: 125 tacacagacagaccttaagaagctggtcgatacggtaaacaaggataattagaatatttc 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 324 tacacagacagaccttaagaagctggtcgatatggtaaacaaggataattagaatatttc 383

                                                                       
Query: 185 aggggagaaggctgaacattccaaagcagatgagaaggaattggaaacacatccgccagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggggagaaggctgaacattccaaagcagatgagaaggaattggaaacacatccgccagc 443

                                                                       
Query: 245 cccatccatccctgggcgactcaagagagggcggggaacgggtgtgtttatttaatctgt 304
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccatccatccctgggcgactcgagagagggcggggaacgggtgtgtttatttaatctgt 503

                                                                       
Query: 305 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacatgcaccacagtgct-gt 363
           ||||||||||||||||||||||||                ||||||||||||||||| ||
Sbjct: 504 gtgtgtgtgtgtgtgtgtgtgtgt----------------acatgcaccacagtgcttgt 547

                                                                       
Query: 364 gtgaaagtcacaccacagctttagatgttgttcctcatgaggcagggtctcttactggcc 423
           |||||||||| |  |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtgaaagtcagaggacagttttagatgttgttcctcatgaggcagggtctcttactggcc 607

                                                                       
Query: 424 actgtgtatgccaggctatgagtgcaccaccttcgggggatcctcgcgtctctgt--cgc 481
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 608 actgtgtatgccaggctatgagtgcaccaccttcgggggatcctcgcgtctctgtgtcgc 667

                                                                       
Query: 482 atcccgtaggagcactgagattacagacatgcactattgagcgtggttctacaaggatgc 541
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 668 atcccgtaggagcactgagattacagacgtgcactattgagcgtggttctacaaggatgc 727

                                                                       
Query: 542 ttgggtattaaactctggtcctgatgctcacacggcaagcacttggcccagagtcatctc 601
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tggggtattaaactctggtcctgatgctcacacggcaagcacttggcccagagtcatctc 787

                                                                       
Query: 602 cccagcttcaactaccatctttgaaatcctgttttatatatgtgtgtgtacatgcatgct 661
           ||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 788 cccagcttcaattaccatctttgaaatcctgttttatttatgtgtatgtacatgcatgct 847

                                 
Query: 662 atagtgcatctatagaggaggc 683
           ||||||||||||||||||||||
Sbjct: 848 atagtgcatctatagaggaggc 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1082
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1072
Effective search space:   721456
Effective search space used:   721456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no324_a19.g1 MSMg01no324_a19.g1 CHROMAT_FILE:
MSMg01no324_a19.g1 PHD_FILE: MSMg01no324_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:16 2005
         (649 letters)



>mm_chr1_121184849_121185897
          Length = 1049

 Score =  605 bits (313), Expect = e-177
 Identities = 319/321 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttactgtaccgctcgctgaaggggactacgtgagctgtgacttgagacttgctgcatg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttactgtactgctcgctgaaggggactacgtgagctgtgacttgagacttgctgcatg 262

                                                                       
Query: 61  ccatggttttggggctctgctctgagaatgcttggtcctgactctgctcttggcttcaaa 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatggttttggagctctgctctgagaatgcttggtcctgactctgctcttggcttcaaa 202

                                                                       
Query: 121 gatttttaaaattattatttttaagatgtcatacaactctatactgtatgtcgagcacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatttttaaaattattatttttaagatgtcatacaactctatactgtatgtcgagcacat 142

                                                                       
Query: 181 ttacctccattcccaattccttctctgttcttacctctctctctcctcccatttgtccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ttacctccattcccaattccttctctgttcttacctctctctctcctcccatttgtccct 82

                                                                       
Query: 241 gttggttggtattaattgttaacttgacacaactagaatcatctggagagagagtttcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  gttggttggtattaattgttaacttgacacaactagaatcatctggagagagagtttcag 22

                                
Query: 301 ttaggtgttgtctagatcaga 321
           |||||||||||||||||||||
Sbjct: 21  ttaggtgttgtctagatcaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)