Query= MSMg01no324_a19.b1 MSMg01no324_a19.b1 CHROMAT_FILE:
MSMg01no324_a19.b1 PHD_FILE: MSMg01no324_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:16 2005
(683 letters)
>mm_chr1_121002873_121003954
Length = 1082
Score = 1125 bits (582), Expect = 0.0
Identities = 649/682 (95%), Gaps = 20/682 (2%)
Strand = Plus / Plus
Query: 5 gaattcctcctctcaccgacccaagacacagctgaagcccattcacttaggcccccctca 64
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcctctca-ggacccaaggcacagctgaagcccattcacttaggcccccctca 263
Query: 65 gcgtttcccgatctgaataaatcaagagggagtctgtctgaaatttatctttgtggtgtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcgtttcccgatctgaataaatcaagagggagtctgtctgaaatttatctttgtggtgtt 323
Query: 125 tacacagacagaccttaagaagctggtcgatacggtaaacaaggataattagaatatttc 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 324 tacacagacagaccttaagaagctggtcgatatggtaaacaaggataattagaatatttc 383
Query: 185 aggggagaaggctgaacattccaaagcagatgagaaggaattggaaacacatccgccagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggggagaaggctgaacattccaaagcagatgagaaggaattggaaacacatccgccagc 443
Query: 245 cccatccatccctgggcgactcaagagagggcggggaacgggtgtgtttatttaatctgt 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccatccatccctgggcgactcgagagagggcggggaacgggtgtgtttatttaatctgt 503
Query: 305 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacatgcaccacagtgct-gt 363
|||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 504 gtgtgtgtgtgtgtgtgtgtgtgt----------------acatgcaccacagtgcttgt 547
Query: 364 gtgaaagtcacaccacagctttagatgttgttcctcatgaggcagggtctcttactggcc 423
|||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtgaaagtcagaggacagttttagatgttgttcctcatgaggcagggtctcttactggcc 607
Query: 424 actgtgtatgccaggctatgagtgcaccaccttcgggggatcctcgcgtctctgt--cgc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 608 actgtgtatgccaggctatgagtgcaccaccttcgggggatcctcgcgtctctgtgtcgc 667
Query: 482 atcccgtaggagcactgagattacagacatgcactattgagcgtggttctacaaggatgc 541
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 668 atcccgtaggagcactgagattacagacgtgcactattgagcgtggttctacaaggatgc 727
Query: 542 ttgggtattaaactctggtcctgatgctcacacggcaagcacttggcccagagtcatctc 601
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tggggtattaaactctggtcctgatgctcacacggcaagcacttggcccagagtcatctc 787
Query: 602 cccagcttcaactaccatctttgaaatcctgttttatatatgtgtgtgtacatgcatgct 661
||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 788 cccagcttcaattaccatctttgaaatcctgttttatttatgtgtatgtacatgcatgct 847
Query: 662 atagtgcatctatagaggaggc 683
||||||||||||||||||||||
Sbjct: 848 atagtgcatctatagaggaggc 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1082
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1072
Effective search space: 721456
Effective search space used: 721456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_a19.g1 MSMg01no324_a19.g1 CHROMAT_FILE:
MSMg01no324_a19.g1 PHD_FILE: MSMg01no324_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:16 2005
(649 letters)
>mm_chr1_121184849_121185897
Length = 1049
Score = 605 bits (313), Expect = e-177
Identities = 319/321 (99%)
Strand = Plus / Minus
Query: 1 atttactgtaccgctcgctgaaggggactacgtgagctgtgacttgagacttgctgcatg 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttactgtactgctcgctgaaggggactacgtgagctgtgacttgagacttgctgcatg 262
Query: 61 ccatggttttggggctctgctctgagaatgcttggtcctgactctgctcttggcttcaaa 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatggttttggagctctgctctgagaatgcttggtcctgactctgctcttggcttcaaa 202
Query: 121 gatttttaaaattattatttttaagatgtcatacaactctatactgtatgtcgagcacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatttttaaaattattatttttaagatgtcatacaactctatactgtatgtcgagcacat 142
Query: 181 ttacctccattcccaattccttctctgttcttacctctctctctcctcccatttgtccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ttacctccattcccaattccttctctgttcttacctctctctctcctcccatttgtccct 82
Query: 241 gttggttggtattaattgttaacttgacacaactagaatcatctggagagagagtttcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 gttggttggtattaattgttaacttgacacaactagaatcatctggagagagagtttcag 22
Query: 301 ttaggtgttgtctagatcaga 321
|||||||||||||||||||||
Sbjct: 21 ttaggtgttgtctagatcaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|