BAC Information

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BAC

Clone NameMSMg01-324B10
Chromosome1 (Build37)
Map Location 120,700,515 - 120,700,974
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1, Tcfcp2l1, LOC100041753
Downstream geneGli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324B10.T7 (MSMg01no324_b10.b1)MSMg01-324B10.TJ (MSMg01no324_b10.g1)
ACCAG442332AG442333
length740752
length of high quality
(start - end)
471 (37 - 507)458 (76 - 533)
definitionCHROMAT_FILE: MSMg01no324_b10.b1 PHD_FILE: MSMg01no324_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:18 2005CHROMAT_FILE: MSMg01no324_b10.g1 PHD_FILE: MSMg01no324_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTTCGAAATCCGCGGAATTCACAGTC
TGTTTGCGTGATATTTGTTCTGAGAGTGAAGGAGGAGGGGTACACACAGA
GGGAGTAAGAACGAAGGCACTGGGATACCCCAGAGTCCCAGATAAAGACC
CTCAAGATGTTATAGGGAGCTTTGAGGACAACATGACTGGAGAGGTAACA
GCAGGACCAGGCCACATAGGACTTTAACCTGCTAGGTCAGATGGCCAGAG
CTGAGCTAATGGTCTGCCTCCCACCTCTGAGGCAGGGTTCTGGGGCAAAA
CTGTGGATAGCAAGGTTATATGCATCTCTGTGGTTCAAGTCAGCATGACT
CGGCGTCTCTTAGCATGTCTTCTACACTTCTACCTGGACAAAAATCTTCA
CAGGGGTTTCCCGCGAAGGCCTGAGGAGATGCCCATCCCCCTCCCTACAT
GTGTGATTTCTTATGAATCTGGCTCATGTATGATTTCTTACAACGTTGCC
TACACAAGCCTAGAGTGGTCAGGCAGAACAGGCATCAGACAGATGAAGAT
GCACGGAACTGACACGCGATATAACCATGGCTTGCCGTGCCTATACCAGA
TCATGCCGAGAGTCCCTGCTTACCCTCCCCTACCACTCCTGGCCTTCCTC
TGCCTGGGAAAGTCGACAGATAACTGACCAGAGCTCTCTTGGAAGGAGAT
AAGGAGGACGTTTGATGTTTTGATTGTTTCGCGCAGCCAA
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAACTGTCTCCGTCTCTCCAGCATT
AGGATTACAAGCGTGTATCACCATGCATGGTGCTTTCACGTGTAGGGGTA
GAACTTGGGTCTCACATTTGGATGGCCAGCACTTTACTGACTGAGCCAAC
TCCCTGGCTTCTTGCGTTTTCTGTTTAACTTAGATTTTCAGCTGACAATG
GATTTACAGAGGATGCAAGTATTGCACCCAGAGGGTTTTCAGCCCTAGTC
CTAAGTCCATAACAATCAAACCACAGTGGTGTGAGGCATCTTTCCCAGCT
CTGCCAGAGAATTTTAGAGAGGACAGCCGCTACTCATACTCATTTTCCTT
TTACATTTTATTTATTCGTTTTCAAGTATATAAGTGATCTGTCTTTACAC
ACACCAGAAGCAGGAATCAGGTCCCATTACAGCCACCATGTTGACTCACA
TGTTGCTGGGAATTGAACTCAGGATCTCTGGAAGAGCAGCCAGTGCTCTA
AACCGCTGAGCCATCTCTCTAGCCCCGATTCATACTCTTTCTGGTTACAG
CTCCATACAAGAAGGTTACTTTCGCATCGTCTTATACTGTCCAAGGCTTT
TGACTAGAAAGGTGTTGGGGGTGGTCTGTGCCAGACCTCTCCTTCTTCTG
GCCAATCTCATTTCCTTTTTAGCTCATGGAATAAGGTCTTCTCTGGTGCT
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_b10.b1 MSMg01no324_b10.b1 CHROMAT_FILE:
MSMg01no324_b10.b1 PHD_FILE: MSMg01no324_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:18 2005
         (471 letters)



>mm_chr1_120700313_120701187
          Length = 875

 Score =  756 bits (391), Expect = 0.0
 Identities = 442/463 (95%), Gaps = 10/463 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcacagtctgtttgcgtgatatttgttctgagagtgaaggaggaggggtacacaca 62
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcacagtctgggtgtgtgatatttgttctgagagtgaaggaggaggggtacacaca 262

                                                                       
Query: 63  gagggagtaagaacgaaggcactgggataccccagagtcccagataaagaccctcaagat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gagggagtaagaacgaaggcactgggataccccagagtcccagataaagaccctcaagat 322

                                                                       
Query: 123 gttatagggagctttgaggacaacatgactggagaggtaacagcaggaccaggccacata 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gttatagggagctttgaggacaacatgactggagaggtaacagcaggaccaggccacata 382

                                                                       
Query: 183 ggactttaacctgctaggtcagatggccagagctgagctaatggtctgcctcc--cacct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |
Sbjct: 383 ggactttaacctgctaggtcagatggccagagctgagctaatggtctgcctcctgca--t 440

                                                                       
Query: 241 ctga-----ggcagggttctggggcaaaactgtggatagcaaggttatatgcatctctgt 295
           ||||     |||||||||||||||||||||||||||||||||||  |  |||||||||||
Sbjct: 441 ctgaagacaggcagggttctggggcaaaactgtggatagcaaggggag-tgcatctctgt 499

                                                                       
Query: 296 ggttcaagtcagcatgactcggcgtctcttagcatgtcttctacacttctacctggacaa 355
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 500 ggttcaagtcagcatgactcggcgtcacttagcatgtcttctacacttctacctggacaa 559

                                                                       
Query: 356 aaatcttcacaggggtttcccgcgaaggcctgaggagatgcccatccccctccctacatg 415
           |||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||
Sbjct: 560 aaatcttcacaggggtttccagggaaggcctgaggagatacccatccccctccctacatg 619

                                                      
Query: 416 tgtgatttcttatgaatctggctcatgtatgatttcttacaac 458
           |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 tgtgatttcttatgaatctggctcatgtgtgatttcttacaac 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 875
Length adjustment: 10
Effective length of query: 461
Effective length of database: 865
Effective search space:   398765
Effective search space used:   398765
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)