Query= MSMg01no324_f15.b1 MSMg01no324_f15.b1 CHROMAT_FILE:
MSMg01no324_f15.b1 PHD_FILE: MSMg01no324_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:39 2005
(190 letters)
>mm_chr1_154557305_154557894
Length = 590
Score = 323 bits (167), Expect = 4e-93
Identities = 182/187 (97%), Gaps = 1/187 (0%)
Strand = Plus / Plus
Query: 4 ggaattc-ccatgtataccaggctggcctagaactcacagagatccacctgcctctgcct 62
||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcaccatgtagacgaggctggcctagaactcacagagatccacctgcctctgcct 262
Query: 63 cctgagtgcaggttcaccatcacagcaggtgtgcccaagagttgtaagcatctttatata 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cctgagtgcaggttcaccatcacagcaggtgtgcccaagagttgtaagcatctttatata 322
Query: 123 cattattcatacggagagcttccactacttgaaagttggcaggggacaacaaaatactgt 182
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 323 cattattcatacggagagcttcaactacttgaatgttggcaggggacaacaaaatactgt 382
Query: 183 gtgttcc 189
|||||||
Sbjct: 383 gtgttcc 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space: 105924
Effective search space used: 105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no324_f15.g1 MSMg01no324_f15.g1 CHROMAT_FILE:
MSMg01no324_f15.g1 PHD_FILE: MSMg01no324_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:39 2005
(536 letters)
>mm_chr1_154603743_154604678
Length = 936
Score = 998 bits (516), Expect = 0.0
Identities = 531/536 (99%)
Strand = Plus / Minus
Query: 1 cattttatttatttatttattttgttacctctccagtaaacggcaaattcttggcttgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 cattttatttatttatttattttgttacctctccagtaaacggcaaattcttggcttgat 700
Query: 61 aactagagtctgtttcttccattggcttctgttctttttgtttgccttttggctccttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 aactagagtctgtttcttccattggcttctgttctttttgtttgccttttggctccttgc 640
Query: 121 agactccttcatgacttccacctcctccactggcctgcccgagggaggtttctttacgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 639 agactccttcatgacttccacctcctccactggcctgcccgagggaggtttctttacatc 580
Query: 181 tttgactttgaaggatgacagttgaagcatattcaagtgccttaccacggtcctgggttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tttgactttgaaggatgacagttgaagcatattcaagtgccttaccacggtcctgggttt 520
Query: 241 ttgtggggttgaacccacatgaattggcggtagatctctgttagacaccagcatgaggac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ttgtggggttgaacccacatgaattggcggtagatctctgttagacaccagcatgaggac 460
Query: 301 ggcaggagtcctggggtcctgacccctcgtgggctgcctctgggcagtagcagcactgcc 360
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 459 ggcaggagtcctggggtcctgaccccttgtgggctgcctctgggcaggagcagcactgcc 400
Query: 361 taaggggtgcttttcaaaagctgcccaggcttctcggttctgattctctttttgtcggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 taaggggtgcttttcaaaagctgcccaggcttctcggttctgattctctttttgtcggct 340
Query: 421 cagaagaccatcagtgaagtaaggctttgctgctatgatggagttgatttcataagtgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cagaagaccatcagtgaagtaaggctttgctgctatgatggagttgatttcataagtgtt 280
Query: 481 atacctgtcagccaggattctcccagctgtaaagggctgaagaacagttgatccag 536
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 279 atacctgtcagccaggattctcccagctataaagggctgaggaacagttgatccag 224
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
