BAC Information

Click to search

BAC

Clone NameMSMg01-324I21
Chromosome1 (Build37)
Map Location 118,326,362 - 118,326,552
singlet/doubletsinglet
Overlap geneCntnap5a
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324I21.T7 (MSMg01no324_i21.b1)MSMg01-324I21.TJ (MSMg01no324_i21.g1)
ACCAG442674AG442675
length723728
length of high quality
(start - end)
194 (124 - 317)634 (63 - 696)
definitionCHROMAT_FILE: MSMg01no324_i21.b1 PHD_FILE: MSMg01no324_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:54 2005CHROMAT_FILE: MSMg01no324_i21.g1 PHD_FILE: MSMg01no324_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGAGCCGGCGCGGAAT
TCATCATTGTTACCTAAAAACATTTTGGACTTTCATGTATTTTTGTTAGC
ATGCTGACATTCAGTATCTCAAAGTAGAAAGTCTTCCCATCCATATTTTA
GTCCTCACTGCGCTTCATGATCATTATTTCACAGATGTCACAGATAGGGG
CAAGGCTCTTACAAAGGTACAACTTATGCATCTAAACCAGCACACATACT
GCTTCTACAGAAAGAGGTGGAAAAGAATGGCATGAATTGCTGCTGACTAG
TTATACTCTTCCTTGGTGGGATANATGAAAGTGTGTGCATGCATGTGTGT
GTGTGAATTTGTGTACTTGCGCATGTGTGCATAAATGTGGCTACATATGA
GTATATGTGGATGTATGAGTGTGAGCGTGTGTGTGTGTGTGTGTGTGTGT
GTGTTACTTGATAATGCCTGCTAGAGGTCAATGTCCAAGTTCCTCCTCAA
TTATCCTGTACTTCATTTTTTTTTTTTTGAACAGAGTCTCTATCTGAACC
TGGAACTCTCCATTCCTGCTATGAGAGTAGCAGTGGCCTGTTTGACTGTG
CCTCTTTTGTTATGGGTATTCCTAGTCATGTTATTTGTGCTCTGAGGCAC
TGTTTTTTTTTTTTCATGACAAAACGTAGGTCCTTCTCTGGGTGCGCGTT
TTCCTGAGCTCTAATAGTTGTGT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCAGAAATTCCTTGTTCACTCTACCTTAGTTTTGG
AGACATGTTCCTAACTGAGTCCAAAGCTGGTCATTTGCCTTGATTAGTTG
TACAGTGAGCTCTAGGTGAGTCTGTCCTCTGCCTCCCCAGTACAGATTCT
GAGACTCCAATCTCAGGTCCTTAATGTTATGAAGCAAGTACATTACTGAG
TGATCCAACTTCATAGACCCTATTTATTTGTTTTCCTGGTGTCTAAATTA
TTTTTAATTGTTTTAACACATATTTTGAAGCAAACAAATGTCCCATCCAG
CAGGACCCAGTTATTCATGGGTGCGAGGGCGACCGCAAACCTGAAGAGAA
ATGAGCGAGAAAGAGAAGCAGAGACCAAGGAGGATTCCTGTCAAGGTCTC
ACTCAGTTTATTAGGCTGAAACGCCAGGTTTTAAGCACACAGCAAGGGAA
ATAGGGAGGGGTTGAGGGGGAATTAACAAAGAACAAAGAAGTGGGCATCT
GGGGACATGAAGGCCGACCTCAGACTGCAGGCGGGAGGCACTCTGAATCT
ATATCCAGGATATAGAATCCTCCTTAACAGCCTTGGGAGTCAGGCTGGGC
TCAGCACATAACTCATGTCCTTAGAAGTCTTGGGAGTCAGGAAGAGATAA
GGAAGAGGGGTCTATAATTTAGCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_i21.b1 MSMg01no324_i21.b1 CHROMAT_FILE:
MSMg01no324_i21.b1 PHD_FILE: MSMg01no324_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:54 2005
         (194 letters)



>mm_chr1_118326162_118326752
          Length = 591

 Score =  360 bits (186), Expect = e-104
 Identities = 191/194 (98%), Gaps = 3/194 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagaaagtcttcccatccatattttagtcctcactgcgcttcatgatcattatttcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gtagaaagtcttcccatccatattttagtcctcactgcgcttcatgatcattatttcaca 332

                                                                       
Query: 61  gatgtcacagataggggcaaggctcttacaaaggtacaacttatgcatctaaaccagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gatgtcacagataggggcaaggctcttacaaaggtacaacttatgcatctaaaccagcac 272

                                                                       
Query: 121 acatactgcttctacagaaagaggtggaaaagaatggcatgaattgctgctgactagtta 180
           |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 271 acatactgcttctacagaaagaggtgg---agaatggcatgaattgctgctgactagtta 215

                         
Query: 181 tactcttccttggt 194
           ||||||||||||||
Sbjct: 214 tactcttccttggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 591
Length adjustment: 8
Effective length of query: 186
Effective length of database: 583
Effective search space:   108438
Effective search space used:   108438
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)