Query= MSMg01no324_j04.b1 MSMg01no324_j04.b1 CHROMAT_FILE:
MSMg01no324_j04.b1 PHD_FILE: MSMg01no324_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:55 2005
(424 letters)
>mm_chr1_38998348_38999174
Length = 827
Score = 783 bits (405), Expect = 0.0
Identities = 421/427 (98%), Gaps = 3/427 (0%)
Strand = Plus / Plus
Query: 1 ctcatttgcaacaccctgagagccaaattgaaatattgcatgaggagatgattcaaggtt 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcatttgcgacaccctgagagccaaattgaaatattgcatgaggagatgattcaaggtt 260
Query: 61 cataaatggaacaattttagagttttaattatgctgtaagagaattctattaactaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataaatggaacaattttagagttttaattatgctgtaagagaattctattaactaaaga 320
Query: 121 atttattcttgtgtttgatttagtttcctcattttgtcttttagcgactggcatactttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttattcttgtgtttgatttagtttcctcattttgtcttttagcgactggcatactttc 380
Query: 181 tgaagcagagggaaatacattctaaccaacctaaggtaaaaatcatacatatgctagctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagcagagggaaatacattctaaccaacctaaggtaaaaatcatacatatgctagctc 440
Query: 241 ttgtggttacattattatatatgtttacatcataactttttagtaaatgatgctttagct 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtggttacattagtatatatgtttacatcataactttttagtaaatgatgctttagct 500
Query: 301 gtctactagaggatgttctgtatttgtatatgtgtgt--ataaaaatacaggttcaggaa 358
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 501 gtctactagaggatgttctgtatttgtatatgtgtgtgtataaaaatacagtttcaggaa 560
Query: 359 aaaaaa-tcaagtttttccttttgatacaaactaccacaaaatattggtacttcatgtgt 417
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaaatcaagtttttccttttgatacaaactaccacaaaatattggtacttcatgtgt 620
Query: 418 attctta 424
|||||||
Sbjct: 621 attctta 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 827
Length adjustment: 9
Effective length of query: 415
Effective length of database: 818
Effective search space: 339470
Effective search space used: 339470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_j04.g1 MSMg01no324_j04.g1 CHROMAT_FILE:
MSMg01no324_j04.g1 PHD_FILE: MSMg01no324_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:55 2005
(393 letters)
>mm_chr1_39180222_39181014
Length = 793
Score = 721 bits (373), Expect = 0.0
Identities = 388/393 (98%)
Strand = Plus / Minus
Query: 1 cttcccagactcctctgcagctcttcctggccatgtgactaggttacagccaatagggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cttcccagactcctctgcagctcttcctggccatgtgactaggttacagccaatagggag 606
Query: 61 tgagcagagatgaaaatgttttgcaggaaggacaccccaccaacaccatcacttttccca 120
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 605 tgagcagagatgaaaatgttttgcaagaaggacaccccaccaccaccatcacttttccca 546
Query: 121 gggcttagctggtgctgagtggtctggaggaattcaagacatggaaaacttggaaagaag 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gggcttagctggtactgagtggtctggaggaattcaagacatggaaaacttggaaagaag 486
Query: 181 gaggctgagtccttggctgagagttaagctaagcatcacaaagctgcgggcatatggagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gaggctgagtccttggctgagagttaagctaagcatcacaaagctgcgggcatatggagc 426
Query: 241 cactatctcatgtgttgacagagattgtaaaattcccagaatgccaagctgtgacctgca 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 425 cactatctcatgtgttgacagagattgtaaaatccccagaatgccaagctgtgacctgca 366
Query: 301 tctctccctgttcctcctgcatgcttgaaagccctgcctagggaggaaccctctgagctg 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tctctccctgtgcctcctgcatgcttgaaagccctgcctagggaggaaccctctgagctg 306
Query: 361 attgttactgatgtttcaataatttatgacagt 393
|||||||||||||||||||||||||||||||||
Sbjct: 305 attgttactgatgtttcaataatttatgacagt 273
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
