Query= MSMg01no324_k15.b1 MSMg01no324_k15.b1 CHROMAT_FILE:
MSMg01no324_k15.b1 PHD_FILE: MSMg01no324_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:02 2005
(654 letters)
>mm_chr1_109056460_109057515
Length = 1056
Score = 1002 bits (518), Expect = 0.0
Identities = 621/656 (94%), Gaps = 3/656 (0%)
Strand = Plus / Plus
Query: 1 gtagcttgctggtagcgagttgtcaaaactcacctctcaacttttcctttt--ggattct 58
||||||||||| |||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 201 gtagcttgctgttagctagttgtcaaaaatcacctctcaacttttccttttttggattct 260
Query: 59 gtagttgccagacacaaatcctacatgcttgacaagatacatagtttcactgaaaataaa 118
||||||||||||||||||||||||||||||| | ||||||||| ||| | |||||||||
Sbjct: 261 gtagttgccagacacaaatcctacatgcttgtccagatacataatttaattgaaaataat 320
Query: 119 taatttagataaaaatcaaaatatctcacatgatatgtactcactgataagtggatagta 178
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct: 321 taatttagataaaaatcaaaataactcacattatatgtactcactgataagtggatatta 380
Query: 179 gcccagaaacttagaatacccaagatataaaatacaatttgcaaaacatttgaaactcaa 238
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct: 381 gcccagaaacttagaatacccaagatagaaaatacaatttgcgaaacacttgaaactcaa 440
Query: 239 gaagaacgaatactcttaatgtggagactttgccccttcatagaattgggaaaaaaacac 298
|||||||||| || | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gaagaacgaagac-caaaatgtggagactttgccccttcatagaattgggaacaaaacac 499
Query: 299 ccatggaaggagttacagagacaaagtttgaagctgagatgaaaggacgcactatctaga 358
||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||
Sbjct: 500 ccatggaaggagttacagagacaaagtttgaagctgagacgaaaggatggactatctaga 559
Query: 359 gcctgccatacctggggatccatcccgtaatcagcctccaaatgctgacaccattgcata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcctgccatacctggggatccatcccgtaatcagcctccaaatgctgacaccattgcata 619
Query: 419 cactagcaagattttgctgaaaggacccttatatagctgtctcttttgagactatgctgg 478
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 cactagcaagattttgctgaaaggacccttatatagctgtctcttgtgagactatgctgg 679
Query: 479 gtcctagcaaacacagaaatggatgctcacagtcagtattggatagatcacagagcaccc 538
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 680 gtcctagcaaacacagaagtggatgctcacagtcagtattggatagatcacagagccccc 739
Query: 539 aatggaggatctagagaaaatacccaaggagctaaagggatctgcatccccataggtgga 598
||||||||||||||||||| || ||||||||||||||| ||||||| |||||||||||||
Sbjct: 740 aatggaggatctagagaaagtatccaaggagctaaaggaatctgcaaccccataggtgga 799
Query: 599 acaacaatatgaactaaccagtaccccccagagcttgtgtctctagctgcatatgt 654
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 800 acaacaatatgaactaaccagtatcccccagagctcatgtctctagctgcatatgt 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1056
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1046
Effective search space: 673624
Effective search space used: 673624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_k15.g1 MSMg01no324_k15.g1 CHROMAT_FILE:
MSMg01no324_k15.g1 PHD_FILE: MSMg01no324_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:02 2005
(632 letters)
>mm_chr1_109369362_109370390
Length = 1029
Score = 984 bits (509), Expect = 0.0
Identities = 602/635 (94%), Gaps = 9/635 (1%)
Strand = Plus / Minus
Query: 1 agcaccaagagatctggcagccccttctggccctcacaagtactatatgcaggcacacca 60
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 829 agcaccaacagatctggcagccccttctggccctcacaagaactatatgcagacacacca 770
Query: 61 catacacataggtgatagaaattaaaataaattcactttgcagtgtaaatgatgtacaag 120
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 769 gatacacataggtgatagaaataaaaataaattcactttgcagtgtaaatgatgtacaag 710
Query: 121 atttagcattcaaaatgtaaatgttggtaaatagtaatatttgttaagtaaaaa-aaata 179
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 709 atttagcattcaaaatgtaaatgttggtaaatagtaatatttcttaagtaaaaagaaata 650
Query: 180 aattttgaaaccaatcgtgc-aaaaatatgaaaatatgctattatttctctttatggtgc 238
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 649 aattttgaaaccaatcgtgcaaaaaatatgaaaatatgctattatttctttttatggtgc 590
Query: 239 ttgtacatctctaggtagtctccatatattttagaattttaaaatatagaacttttattt 298
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 589 ttgtacatctctatgtagtctccatatattttagaattttaaaatatataacttttattt 530
Query: 299 caaatgaatatatctgtctttatgctatctactagaatctatcgccgctttgttgttgct 358
||||||||||||||||||||||||||||| ||||||||||| | | ||||||||||||
Sbjct: 529 gaaatgaatatatctgtctttatgctatctcctagaatctattgttgttttgttgttgct 470
Query: 359 gtttaaaaaaaaaactcaattttttagggataattataatcttattgaaaattataattt 418
|||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gttttaaaaaaaaa--cagttttttagggataattataatcttattgaaaattataattt 412
Query: 419 ctctttttttactttttcaattgttttggggctaagttcttttgtgtttcacacagacac 478
| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 411 c---ttttttgctttttcaattgttttggggctaaattcttttgtgtttcacacagacac 355
Query: 479 attcctatttctct-tctttctaccctccctaccatcttccatctcactctttctctcat 537
||| |||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 354 attactatttct-tgtctttccaccctccctaccatcttccatctcactctttctctcat 296
Query: 538 tcatgtctcccagcctctgtttatcactttccctcacttggtattttccttttctttact 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tcatgtctcccagcctctgtttatcactttccctcacttggtattttccttttctttact 236
Query: 598 agacaaatagaactctatttataatgtcattcttt 632
||||||||| || |||||||||||||||| |||||
Sbjct: 235 agacaaatataattctatttataatgtcagtcttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1029
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1019
Effective search space: 633818
Effective search space used: 633818
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
