BAC Information

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BAC

Clone NameMSMg01-324O13
Chromosome1 (Build37)
Map Location 129,940,763 - 129,990,680
singlet/doubletdoublet
Overlap geneZranb3, EG666784
Upstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, LOC666778, LOC100042670
Downstream geneR3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324O13.T7 (MSMg01no324_o13.b1)MSMg01-324O13.TJ (MSMg01no324_o13.g1)
ACCAG442932AG442933
length694719
length of high quality
(start - end)		511 (50 - 560)639 (81 - 719)
definitionCHROMAT_FILE: MSMg01no324_o13.b1 PHD_FILE: MSMg01no324_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:20 2005CHROMAT_FILE: MSMg01no324_o13.g1 PHD_FILE: MSMg01no324_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,940,763 - 129,941,269)(129,990,273 - 129,990,680)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAATTAAAGTTATATTTATAACAACCAATCTTCAATAATATT
GAGATAATTAGTGTGATCTGCTTATTTCTTCTTTTAAAAGAAAAAGACTA
TGTTGAATGGAATTTAGGAAGTGACGTTTGTGATCTAGGATATCGCCACT
GCAACAGTCATTATTCACTTGCATAAGTGAACGAATGCTTTAAGGGAAGT
CAAGCATGGGGGCAGATAAGATCAGAAATGAGGAAGGTATTTTGCAGTTC
TAAGTGGGTGGCACAGAAGCTTAAAATCCAACGGGACAGTAAGACTCCCA
CTCAGCTTCAAGCAGCATGATGGGAGACAGAGCTCTGAGGGCAGATCCAG
TTGCAGATCAAGATGGTTTTGACCTAATTTGTTTTTGTTTTTGTTTTTTG
TTTTTTTCGAGACAGGGTTTCTCTATGTAGCTCTGGCTGTCCTGGAACTC
ACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCC
TCCTGAGTACTGGGATTAAGGCATGCACCACCACGCCCCGGCTTGACCTA
AATTTTTAANGATAAAATTGANGTAGCAAGCATAGTTGAAGTGAAATTTC
TGGTATCTTTTGAGCCTCAGTAAATGATGGGTTTTTGGGTTTGT

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTTTGCCAGGTAGAGATG
CCTCATTAGACATGTGAATCTGAAGTTTAAAAGAGTTCCTCATGTGTAAA
TGTAGAAGTTGTCCGAGAACTAATGTTTAAAACCATGAAAGAAAGCTACA
GGAACTGAGCCCTAGTTCATTCCACCATTAAAAGTTGGCGAGGAGCCGGG
CATGGTGGCACATGCTTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCG
GATTTCGGAGTTCGAGACTAGCCTGATCTACAAAGTGAGTTCCAAGACAG
CCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAAACAAACAAAC
AAACAAAAAGTTGGCGAGGACTGAATTTTAGACTGAGAAGAGTTGACCAG
TGGTGGGATGAGAACCATGAGGATTCTGTGTTCTGGAGTCCAGGCGGAAG
TGAGGAAGGTGGAGCCATGAAAAGGCCAGTAAGATGACCCAGACGTCTTA
CGGGGGCTTCCTTTGCTTCCCAAGCCAGGGTTCTCGTATATAATGTACTG
CTTCCAAGGACACTTTTGCTTTGGTTACTAAGTTAATCATTCAGGCTTCA
ATTTTAGTATATATGTGCATATTATTTAATATGTACATACATATTANAAT
TATATAAAGGATATACATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_o13.b1 MSMg01no324_o13.b1 CHROMAT_FILE:
MSMg01no324_o13.b1 PHD_FILE: MSMg01no324_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:20 2005
         (511 letters)



>mm_chr1_129940559_129941469
          Length = 911

 Score =  949 bits (491), Expect = 0.0
 Identities = 503/507 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattaaagttatatttataacaaccaatcttcaataatattgagataattagtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattaaagttatatttataacaaccaatcttcaataatattgagataattagtg 264

                                                                       
Query: 65  tgatctgcttatttcttcttttaaaagaaaaagactatgttgaatggaatttaggaagtg 124
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 tgatctgcttatttcttcttttaaaagaaaaagactatgttgaatgaaatttaggaagtg 324

                                                                       
Query: 125 acgtttgtgatctaggatatcgccactgcaacagtcattattcacttgcataagtgaacg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acgtttgtgatctaggatatcgccactgcaacagtcattattcacttgcataagtgaacg 384

                                                                       
Query: 185 aatgctttaagggaagtcaagcatgggggcagataagatcagaaatgaggaaggtatttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgctttaagggaagtcaagcatgggggcagataagatcagaaatgaggaaggtatttt 444

                                                                       
Query: 245 gcagttctaagtgggtggcacagaagcttaaaatccaacgggacagtaagactcccactc 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 gcagttctaagtgggtggcacagaagcttaaaatccaacaggacagtaagactcccactc 504

                                                                       
Query: 305 agcttcaagcagcatgatgggagacagagctctgagggcagatccagttgcagatcaaga 364
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggcttcaagcagcatgatgggagacagagctctgagggcagatccagttgcagatcaaga 564

                                                                       
Query: 365 tggttttgacctaatttgtttttgtttttgttttttgtttttttcgagacagggtttctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggttttgacctaatttgtttttgtttttgttttttgtttttttcgagacagggtttctc 624

                                                                       
Query: 425 tatgtagctctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatgtagctctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaa 684

                                      
Query: 485 atccacctgcctctgcctcctgagtac 511
           ||||||||||||||||||| |||||||
Sbjct: 685 atccacctgcctctgcctcttgagtac 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no324_o13.g1 MSMg01no324_o13.g1 CHROMAT_FILE:
MSMg01no324_o13.g1 PHD_FILE: MSMg01no324_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:20 2005
         (639 letters)



>mm_chr1_129989642_129990680
          Length = 1039

 Score =  775 bits (401), Expect = 0.0
 Identities = 406/408 (99%)
 Strand = Plus / Minus

                                                                        
Query: 232  tcgagactagcctgatctacaaagtgagttccaagacagccagggctacacagagaaacc 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 tcgagactagcctgatctacaaagtgagttccaagacagccagggctacacagagaaacc 980

                                                                        
Query: 292  ctgtctcgaaaaacaaaaaacaaacaaacaaacaaaaagttggcgaggactgaattttag 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979  ctgtctcgaaaaacaaaaaacaaacaaacaaacaaaaagttggcgaggactgaattttag 920

                                                                        
Query: 352  actgagaagagttgaccagtggtgggatgagaaccatgaggattctgtgttctggagtcc 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919  actgagaagagttgaccagtggtgggatgagaaccatgaggattctgtgttctggagtcc 860

                                                                        
Query: 412  aggcggaagtgaggaaggtggagccatgaaaaggccagtaagatgacccagacgtcttac 471
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  aggcggaagtgaggagggtggagccatgaaaaggccagtaagatgacccagacgtcttac 800

                                                                        
Query: 472  gggggcttcctttgcttcccaagccagggttctcgtatataatgtactgcttccaaggac 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799  gggggcttcctttgcttcccaagccagggttctcgtatataatgtactgcttccaaggac 740

                                                                        
Query: 532  acttttgctttggttactaagttaatcattcaggcttcaattttagtatatatgtgcata 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739  acttttgctttggttactaagttaatcattcaggcttcaattttagtatatatgtgcata 680

                                                            
Query: 592  ttatttaatatgtacatacatattanaattatataaaggatatacatc 639
            ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 679  ttatttaatatgtacatacatattaaaattatataaaggatatacatc 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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