BAC Information

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BAC

Clone NameMSMg01-325D17
Chromosome1 (Build37)
Map Location 155,109,623 - 155,276,128
singlet/doubletdoublet
Overlap geneLamc1, EG667795, EG626058, 1700012A16Rik
Upstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2
Downstream geneDhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325D17.T7 (MSMg01no325_d17.b1)MSMg01-325D17.TJ (MSMg01no325_d17.g1)
ACCAG443173AG443174
length751740
length of high quality
(start - end)		625 (72 - 696)675 (66 - 740)
definitionCHROMAT_FILE: MSMg01no325_d17.b1 PHD_FILE: MSMg01no325_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:43 2005CHROMAT_FILE: MSMg01no325_d17.g1 PHD_FILE: MSMg01no325_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,275,504 - 155,276,128)(155,109,623 - 155,110,297)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAATCCGCGG
AATTCTCTATGTTGCCCAGAATGCCTGTCGCACTAGTGCTGGGAGTGCAT
GCCTGGCAGGAAAGGCATTTTTGTTATTTTTACAGTATTTAGGTGACTGA
AGCTGGCTGATGACTACTATTCAGTGCCACCGGATCCTAGTTGACCATCA
ATTGTCCCCATAAACCTATGCCAGTGCTCATCTTTGTCCACTCCCACACT
CGCCAGTTTGATATCTGCCTGAGTACTACAGTTCCAGATGAACAGAATCA
CAGCTCAGCCATAACAGGAGCTGCTAGCTTCATTCAATGGACAACGCGAG
GAAAACATACCTCGACCAGGATCCCAACAAAAGGGATGGACGCCTCTTCA
TATTTCTCAAAGAAGAGCTCCGGGTTACTCTTCCAGACTCCGAGCCATCT
GTCCTTCGCTTTCAGCTTCTCCAACAGGTATCTACTCATAGCTTCCTCTG
CATCTTCTGCCTAATGAGAGACAAGACACAGCTGTGCAGATGACCACGAA
AGGCAGGGAGCCAGGAGAGGCAGGGAGCCTGGAGGGGCAGGGGGCCTGGA
GAGGCAGGGAGCCTGGAGGGCCAGGGGGCCTGGAGGGGCAGGGAGCCTGG
AGGGGCAGGGAGCCTGGAGGGGCAGCTCTGAGGGTGAGGAGCTGCAGAGC
TAGTGTGAGATCCAAGTTCAATTCCCAGAACCCCCATAAAGGTGGATGGA
G

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCAGTACACAAGGCCTGCTGCTCGTCCCCTCCGGT
CCTGATGAAGCCACGGTTAGCCTTTGAGTACGTGTTCTCACAGGACCCAC
TGTAGTACTGATAAGGAATCCAGGGCCCGTCTTCCCGAGTGCGCTTATAG
ATGGCGAAGCTCTCTGGACGGCTGGTGTGGAACTTGAGGCGCACGTAAGT
GATGTCAAAAGCCTTTCCTGCGGAACAAACACATCAGAGTACGTAAGTCG
TGTGGATGAAGATAAGAAAGGCCCCCCATTGCTAACTAGCTGTGAGATTT
GAGGAAGAGCCCAGCATTAGACCAGGAAAACCTCAGGACACCAGACACAC
TAATGGCCCCGTAGGCTCGTCTAAGCCTGGAAATTGCCCATTTCCCCACA
AGTGGTTCTTAACATAGGCCATGAAAACTTGTATAAGTGCGGTACTAATA
CATTTTAAAATAAAACCAAATAATGAGCTCACCTATTCTTACTCCTCGGG
CTTCATTGAACGCTTAATTAAAATATCTTTTCTTAGAAATCTGAAAGCTT
TTGGAATGGGTCCTCTGGGGACGTCCAGTACATTCAAAGCCTTTCCCTTT
ATTAACTAGAGTGCTTCTCTTGGTGCACTGTCCTCAGAACGGTTATCTAC
CCTGGGGAGAAGGAGGCTGTTTGGGACATGAACAGGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_d17.b1 MSMg01no325_d17.b1 CHROMAT_FILE:
MSMg01no325_d17.b1 PHD_FILE: MSMg01no325_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:43 2005
         (625 letters)



>mm_chr1_155275304_155276328
          Length = 1025

 Score = 1208 bits (625), Expect = 0.0
 Identities = 625/625 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctgtcgcactagtgctgggagtgcatgcctggcaggaaaggcatttttgttattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tgcctgtcgcactagtgctgggagtgcatgcctggcaggaaaggcatttttgttattttt 766

                                                                       
Query: 61  acagtatttaggtgactgaagctggctgatgactactattcagtgccaccggatcctagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 acagtatttaggtgactgaagctggctgatgactactattcagtgccaccggatcctagt 706

                                                                       
Query: 121 tgaccatcaattgtccccataaacctatgccagtgctcatctttgtccactcccacactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tgaccatcaattgtccccataaacctatgccagtgctcatctttgtccactcccacactc 646

                                                                       
Query: 181 gccagtttgatatctgcctgagtactacagttccagatgaacagaatcacagctcagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gccagtttgatatctgcctgagtactacagttccagatgaacagaatcacagctcagcca 586

                                                                       
Query: 241 taacaggagctgctagcttcattcaatggacaacgcgaggaaaacatacctcgaccagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 taacaggagctgctagcttcattcaatggacaacgcgaggaaaacatacctcgaccagga 526

                                                                       
Query: 301 tcccaacaaaagggatggacgcctcttcatatttctcaaagaagagctccgggttactct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tcccaacaaaagggatggacgcctcttcatatttctcaaagaagagctccgggttactct 466

                                                                       
Query: 361 tccagactccgagccatctgtccttcgctttcagcttctccaacaggtatctactcatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tccagactccgagccatctgtccttcgctttcagcttctccaacaggtatctactcatag 406

                                                                       
Query: 421 cttcctctgcatcttctgcctaatgagagacaagacacagctgtgcagatgaccacgaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cttcctctgcatcttctgcctaatgagagacaagacacagctgtgcagatgaccacgaaa 346

                                                                       
Query: 481 ggcagggagccaggagaggcagggagcctggaggggcagggggcctggagaggcagggag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ggcagggagccaggagaggcagggagcctggaggggcagggggcctggagaggcagggag 286

                                                                       
Query: 541 cctggagggccagggggcctggaggggcagggagcctggaggggcagggagcctggaggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cctggagggccagggggcctggaggggcagggagcctggaggggcagggagcctggaggg 226

                                    
Query: 601 gcagctctgagggtgaggagctgca 625
           |||||||||||||||||||||||||
Sbjct: 225 gcagctctgagggtgaggagctgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_d17.g1 MSMg01no325_d17.g1 CHROMAT_FILE:
MSMg01no325_d17.g1 PHD_FILE: MSMg01no325_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:43 2005
         (675 letters)



>mm_chr1_155109423_155110497
          Length = 1075

 Score = 1305 bits (675), Expect = 0.0
 Identities = 675/675 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtacacaaggcctgctgctcgtcccctccggtcctgatgaagccacggttagccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtacacaaggcctgctgctcgtcccctccggtcctgatgaagccacggttagccttt 260

                                                                       
Query: 61  gagtacgtgttctcacaggacccactgtagtactgataaggaatccagggcccgtcttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtacgtgttctcacaggacccactgtagtactgataaggaatccagggcccgtcttcc 320

                                                                       
Query: 121 cgagtgcgcttatagatggcgaagctctctggacggctggtgtggaacttgaggcgcacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgagtgcgcttatagatggcgaagctctctggacggctggtgtggaacttgaggcgcacg 380

                                                                       
Query: 181 taagtgatgtcaaaagcctttcctgcggaacaaacacatcagagtacgtaagtcgtgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagtgatgtcaaaagcctttcctgcggaacaaacacatcagagtacgtaagtcgtgtgg 440

                                                                       
Query: 241 atgaagataagaaaggccccccattgctaactagctgtgagatttgaggaagagcccagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaagataagaaaggccccccattgctaactagctgtgagatttgaggaagagcccagc 500

                                                                       
Query: 301 attagaccaggaaaacctcaggacaccagacacactaatggccccgtaggctcgtctaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attagaccaggaaaacctcaggacaccagacacactaatggccccgtaggctcgtctaag 560

                                                                       
Query: 361 cctggaaattgcccatttccccacaagtggttcttaacataggccatgaaaacttgtata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctggaaattgcccatttccccacaagtggttcttaacataggccatgaaaacttgtata 620

                                                                       
Query: 421 agtgcggtactaatacattttaaaataaaaccaaataatgagctcacctattcttactcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgcggtactaatacattttaaaataaaaccaaataatgagctcacctattcttactcc 680

                                                                       
Query: 481 tcgggcttcattgaacgcttaattaaaatatcttttcttagaaatctgaaagcttttgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcgggcttcattgaacgcttaattaaaatatcttttcttagaaatctgaaagcttttgga 740

                                                                       
Query: 541 atgggtcctctggggacgtccagtacattcaaagcctttccctttattaactagagtgct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgggtcctctggggacgtccagtacattcaaagcctttccctttattaactagagtgct 800

                                                                       
Query: 601 tctcttggtgcactgtcctcagaacggttatctaccctggggagaaggaggctgtttggg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctcttggtgcactgtcctcagaacggttatctaccctggggagaaggaggctgtttggg 860

                          
Query: 661 acatgaacaggaaag 675
           |||||||||||||||
Sbjct: 861 acatgaacaggaaag 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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