TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAATTTGGACCCCATTGAGTTAGGGTAAAAGCTTATGATCGAGTT
GAGTATAACCTTCTGACAAAAACAATAAAGTTACAAAGGGATTAAAAGTA
TTGTAAACTAGATGCCTTTTACACAGCAAATAAATTAATGTTATTATAAT
TTATTATTGAATTTAAAACAAATACTACAATGGTTATTGAAATCAAACTT
TTATATTTAGGTATGCATTGCGTTTCCATTATTCATTGTCATAAATAAAG
TAGTAAAGTAATTGTTGTGTTCTATTCAATATCATCCAGCATATTGTAGT
TTATTGTGATAAAGTACATATGATTCCAAAGGATATGAGACCACAAAATA
TTGTTGACCTCTTATCTATTGTATAGTCATGTATCATCTGACTTTATAAA
ATGTTTTTCAGTTTTATAATGCATTTTATATAACAGAGGTCCCTCTTTGG
AACAAACCTACAGGTATGAATGTATTGTCCTAGACTCTCTGATCACTGTG
ATACCTTAAGCCTCACTTTCATATCCCAAGACCTCATCTTCAGTCTTTGA
CATACCTGAAAATTTCCCGTTTTCAGTTCTATTCCTGTTCTAAGGAATAT
TACTTGATTGATTCCTAACCCTATGGGAGGAACAGAAATATGAGTTAACC
AGTACCCCCAGAGCTTATGTTTCTAGCTGCATATGTAGCAGAAGATGGCC
TA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATAGCCTCAGTAATAGTGTCTGGCCCTGGG
ACCAACCCTTGAGCTAGATTCTACTTTGAGCCTGTTACTGGACCTTCTTC
TCCCCAGGGTCCTCTCCATTTCCATCCCTATTATTCTTTCAGACAGAAAC
AATTATGTGTCACATGTGTGACTGTGCAATGGCAACTGCACAAATATCCT
GTCTTCCCAGTGGAGGTGGGCTCCACATGTTCCCTCTTCCCACTGCTGGG
CACTTCATTAAAGGTCCCAATGAGTCCTGAAGTCTCTCACCTCCCAAATC
TTTGGTTCATTCTGGGGGTGGGGGTGGGGAGCAGGNAGGNNTTNTNTTTT
TTTTTTTTTTTCCCCCCCTTGTTTATTTCTTTCTGGTTGCTTCTCTGTTT
CTTCTCTTTGGCCTTTCCTTATTTCGGCTCCCTCGTTTCCGTTTTTTTTT
TTTCCCCTTTTTCCTGCCCTTTCCGGTTATTTCTTTGCCTTCTCTTCCCT
TCCTCTCTTATTTGCTGTTCGCTTCGCTTGCTTCCCTGTTTTTCCGTTTT
CCTTTTCCTCTGTTCCCTTTTCGCCTTTTTTTTTCCTCGCTTTTCGCTTT
TTTTTTTTTTTACTCATCCCCTTTATCCCCCTATTTTTCCCCATTCTTCT
CTCCTTTTTCCCCCTTTTTCCATCCTTTCTCCCCTTTATTTTTTTTTTCC
ACT

Query= MSMg01no325_h20.b1 MSMg01no325_h20.b1 CHROMAT_FILE:
MSMg01no325_h20.b1 PHD_FILE: MSMg01no325_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:00 2005
         (702 letters)



>mm_chr1_112219272_112220375
          Length = 1104

 Score = 1278 bits (661), Expect = 0.0
 Identities = 691/701 (98%), Gaps = 3/701 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaatttggaccccattgagttagggtaaaagcttatgatcgagttgagtataac 64
           |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 204 gaattctaatttggaccctattgagttaaggtaaaagcttatgatcgagttgagtataac 263

                                                                       
Query: 65  cttctgacaaaaa-caataaagttacaaagggattaaaagtattgtaaactagatgcctt 123
           ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 cttctgacaaaaaacaataaagttacaaagggattaaaagtattgtaatctagatgcctt 323

                                                                       
Query: 124 ttacacagcaaataaattaatgttattataatttattattgaatttaaaacaaatactac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttacacagcaaataaattaatgttattataatttattattgaatttaaaacaaatactac 383

                                                                       
Query: 184 aatggttattgaaatcaaacttttatatttaggtatgcattgcgtttccattattcattg 243
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 aatggttattgaaatcaaacttttatatttaggtatgcattgtgtttccattattcattg 443

                                                                       
Query: 244 tcataaataaagtagtaaagtaattgttgtgttctattcaatatcatccagcatattgta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcataaataaagtagtaaagtaattgttgtgttctattcaatatcatccagcatattgta 503

                                                                       
Query: 304 gtttattgtgataaagtacatatgattccaaaggatatgagaccacaaaatattgttgac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtttattgtgataaagtacatatgattccaaaggatatgagaccacaaaatattgttgac 563

                                                                       
Query: 364 ctcttatctattgtatagtcatgtatcatctgactttataaaatgtttttcagttttata 423
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 564 ctcttatctattgtatagtcatgtatcgtctgactttataaaatgtttttcagttttata 623

                                                                       
Query: 424 atgcattttatataacagaggtccctctttggaacaaacctacaggtatgaatgtattgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atgcattttatataacagaggtccctctttggaacaaacctacaggtatgaatgtattgt 683

                                                                       
Query: 484 cctagactctctgatcactgtgataccttaagcctcactttcatatcccaagacctcatc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctagactctctgatcactgtgataccttaagcctcactttcatatcccaagacctcatc 743

                                                                       
Query: 544 ttcagtctttgacatacctgaaaatttccc-gtttt-cagttctattcctgttctaagga 601
           ||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct: 744 ttcagtctttgacatacctgaaaattttccagtttttcagttctattcctgttctaagga 803

                                                                       
Query: 602 atattacttgattgattcctaaccctatgggaggaacagaaatatgagttaaccagtacc 661
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atactacttgattgattcctaaccctatgggaggaacagaaatatgagttaaccagtacc 863

                                                    
Query: 662 cccagagcttatgtttctagctgcatatgtagcagaagatg 702
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cccagagcttatgtttctagctgcatatgtagcagaagatg 904


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1104
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1094
Effective search space:   757048
Effective search space used:   757048
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)