BAC Information

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BAC

Clone NameMSMg01-325M12
Chromosome1 (Build37)
Map Location 109,954,543 - 110,118,202
singlet/doubletdoublet
Overlap genenone
Upstream geneSerpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
Downstream geneLOC435640, EG626474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325M12.T7 (MSMg01no325_m12.b1)MSMg01-325M12.TJ (MSMg01no325_m12.g1)
ACCAG443580AG443581
length731734
length of high quality
(start - end)		618 (44 - 661)503 (75 - 577)
definitionCHROMAT_FILE: MSMg01no325_m12.b1 PHD_FILE: MSMg01no325_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:21 2005CHROMAT_FILE: MSMg01no325_m12.g1 PHD_FILE: MSMg01no325_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,954,543 - 109,954,981)(110,117,700 - 110,118,202)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCGCGGA
ATTCATATTCATCTCCAATCTGCAGGACAATGAAAACAGAAGAGTTGAAC
CCAAATGTTTACATTGCACTAGATGCTTTAGTCTACAAACCTAAAAGACT
CCCTCCTGCTGGGACCAAAGCAGCTACAACAAAAGAAGAAAGGAACTTGG
TTTTAGAACATTTTTCAAGTTCAGAAATAGCAATCAGGTAGGCATGATGC
CATCACTGTTTAAAGAGGGGACTGAGAGAACCTTGAATGAGAACCAGGCA
GTAAGTGGGTGGAAATGAGGGGGAACTTTGAATCTCACCCTGAGTTTACC
TTTTGAAAAGATTTTAAATAAGAAAATGTTTTATTATGGGAAAACAGAAT
TTGCCCTAGAATAGCAAAGACTATTCTCTCCCCAAACTACATGCTAGCTC
CTTTTGTTTTGATTTGAAATAAGGGTCTTTTTATTTACACCACAGAAATT
AATTTGAAAATAAACTGATTAGGTATGAGCTTGGACTTTGACACGTTAAC
TTGTGAATAAAAGAAAGTGTTTTGTAACATGAAAATAATATCCAATGATG
TTTTCACTCTTTTGGTATGACTGAGTGTACATATGTATACACAAACACAC
ACACACACACACACAAACACAGGCACACACACCTGTTAATTCTGAAGCCT
AAGCATGACTTGGAAGGTACAGTTCACCTTC

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGTGGAAAATGTGTGATCTGCTGGA
TATACATAATAAATACTTAGCTCTTAAAACACTGGTAAAGTCAATAATTC
ATTTACAGTTTTTATACAACCTGATTTACAGAATAACAATATTACTTTCT
CTTAATAAATGCGTTTTCTAAAAAGTCATGTCTCAAGCCTCTAATTCCCA
AAGTACATGATAACTAGTAAAACAGTTGTTATTCCTTAAGAGTTTCATTT
AAATTATGCTTCTTTTTAACTTTAGAGCCTATATCTGAATTAGAAATTCA
ATGCAGATAAATGGGAATATAAAATGTCACTGGGATTAGAGTGAGAGAAT
GAAACTTTGGTGTGCAGAAAATCCAAACAAAATGACTAGTAAAATTCTGT
AAGAAGCTATGGAAATTAGATGAGAAATTGTTGGTGAGGCAGCAGGGAAG
GGGCTATTGCCTCAAACTACATTTATTCATGTGGAAAAAGTGTAAAAATG
CCTGGGACTGCCAAGCATCTCAGTCACTATGAACTTAATTGTTGGAACAA
AGGGCTCTTTAGGAGTAGAAGAGTGTTGATTCCACAAAGATGGGAAGGAT
AACATGCCTTTGCTAAATACAATATTGCTTTTGGATTTCACTGCTTTGCT
TTTACATGGTAAACTTGAATTTTTTAAACGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_m12.b1 MSMg01no325_m12.b1 CHROMAT_FILE:
MSMg01no325_m12.b1 PHD_FILE: MSMg01no325_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:21 2005
         (618 letters)



>mm_chr1_109954164_109955181
          Length = 1018

 Score =  818 bits (423), Expect = 0.0
 Identities = 435/439 (99%)
 Strand = Plus / Plus

                                                                       
Query: 180 agaaatagcaatcaggtaggcatgatgccatcactgtttaaagaggggactgagagaacc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaaatagcaatcaggtaggcatgatgccatcactgtttaaagaggggactgagagaacc 439

                                                                       
Query: 240 ttgaatgagaaccaggcagtaagtgggtggaaatgagggggaactttgaatctcaccctg 299
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 ttgaatgagaaccaggcagtaagtgggtagaaatgagggggaactttgaatctcaccctg 499

                                                                       
Query: 300 agtttaccttttgaaaagattttaaataagaaaatgttttattatgggaaaacagaattt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agtttaccttttgaaaagattttaaataagaaaatgttttattatgggaaaacagaattt 559

                                                                       
Query: 360 gccctagaatagcaaagactattctctccccaaactacatgctagctccttttgttttga 419
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 560 gccctagaatagcaaagactattctctccccgaactacatgctagctccttttgttttga 619

                                                                       
Query: 420 tttgaaataagggtctttttatttacaccacagaaattaatttgaaaataaactgattag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttgaaataagggtctttttatttacaccacagaaattaatttgaaaataaactgattag 679

                                                                       
Query: 480 gtatgagcttggactttgacacgttaacttgtgaataaaagaaagtgttttgtaacatga 539
           ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 680 gtatgagcttggactttgacacgttaatttgtgaataaaaaaaagtgttttgtaacatga 739

                                                                       
Query: 540 aaataatatccaatgatgttttcactcttttggtatgactgagtgtacatatgtatacac 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaataatatccaatgatgttttcactcttttggtatgactgagtgtacatatgtatacac 799

                              
Query: 600 aaacacacacacacacaca 618
           |||||||||||||||||||
Sbjct: 800 aaacacacacacacacaca 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_m12.g1 MSMg01no325_m12.g1 CHROMAT_FILE:
MSMg01no325_m12.g1 PHD_FILE: MSMg01no325_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:21 2005
         (503 letters)



>mm_chr1_110117500_110118402
          Length = 903

 Score =  895 bits (463), Expect = 0.0
 Identities = 493/503 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtggaaaatgtgtgatctgctggatatacataataaatacttagctcttaaaacactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tagtggaaaatgtgtgatctgctggatatacataataaatacttagctcttaaaacactg 644

                                                                       
Query: 61  gtaaagtcaataattcatttacagtttttatacaacctgatttacagaataacaatatta 120
           ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 643 gtaaagtcaataattcatttatagtttttatacaacctgatttatagaataacaatatta 584

                                                                       
Query: 121 ctttctcttaataaatgcgttttctaaaaagtcatgtctcaagcctctaattcccaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 583 ctttctcttaataaatgcgttttctaaaaagtcatgtctcaagcctccaattcccaaagt 524

                                                                       
Query: 181 acatgataactagtaaaacagttgttattccttaagagtttcatttaaattatgcttctt 240
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 523 acatgataactagtaaaacaattgttattccttaagagtttcattgaaattatgcttctt 464

                                                                       
Query: 241 tttaactttagagcctatatctgaattagaaattcaatgcagataaatgggaatataaaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 463 tttaactttagagcctatatctgaattagaaattcaatgcagataaatgggaatttaaaa 404

                                                                       
Query: 301 tgtcactgggattagagtgagagaatgaaactttggtgtgcagaaaatccaaacaaaatg 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 403 tgtcactgggattagagtgagagaatgaaactttggagtgcagaaaatccaaacaaaatg 344

                                                                       
Query: 361 actagtaaaattctgtaagaagctatggaaattagatgagaaattgttggtgaggcagca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 343 actagtaaaattctgtaagaagctatggaaattagatgagaaattgttggtgagccagaa 284

                                                                       
Query: 421 gggaaggggctattgcctcaaactacatttattcatgtggaaaaagtgtaaaaatgcctg 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 283 gggaaggggctattgcctcaaactacatttattcatctggaaaaagtgtaaaaatgcctg 224

                                  
Query: 481 ggactgccaagcatctcagtcac 503
           |||||||||||||||||||||||
Sbjct: 223 ggactgccaagcatctcagtcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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