Query= MSMg01no325_o12.b1 MSMg01no325_o12.b1 CHROMAT_FILE:
MSMg01no325_o12.b1 PHD_FILE: MSMg01no325_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:30 2005
(629 letters)
>mm_chr1_127657832_127658860
Length = 1029
Score = 1207 bits (624), Expect = 0.0
Identities = 627/628 (99%)
Strand = Plus / Minus
Query: 1 catagatttgcacaggatgtcagaaacactttgggtctctaacagacccagcatccagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 catagatttgcacaggatgtcagaaacactttgggtctctaacagacccagcatccagga 864
Query: 61 gaaaagaagagaaggcaaaaaaaagttgatagaggtctggccaaatgacagccatacttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gaaaagaagagaaggcaaaaaaaagttgatagaggtctggccaaatgacagccatacttt 804
Query: 121 taattgccttgttggtgattcatgttataataatcaaaaatttcattagtttatttttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 taattgccttgttggtgattcatgttataataatcaaaaatttcattagtttatttttca 744
Query: 181 gactgatgcctttattgtaaggtcaccagtttttttattttgatttgtatatattatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gactgatgcctttattgtaaggtcaccagtttttttattttgatttgtatatattatata 684
Query: 241 cttttatacaatttgaaaattaaattagcttacaaaataacgtttcattgtattttcata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cttttatacaatttgaaaattaaattagcttacaaaataacgtttcattgtattttcata 624
Query: 301 taatttgggctgactctcctccccatcttttcctcttctccacccccctgcccttatccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 taatttgggctgactctcctccccatcttttcctcttctccacccccctgcccttatccc 564
Query: 361 cagagcaccttttcacccccagaacccccttccactttcacatctcctgttcccctcccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cagagcaccttttcacccccagaacccccttccactttcacatctcctgttcccctcccc 504
Query: 421 cctccacaaccacttccccctgaaagccttttcttaggtcggggaaaaggctcaataaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cctccacaaccacttccccctgaaagccttttcttaggtcggggaaaaggctcaataaac 444
Query: 481 acagagctcactatgaggacttgactctagccacccgcataaagagcagaatagaacacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acagagctcactatgaggacttgactctagccacccgcataaagagcagaatagaacacc 384
Query: 541 ctatctgtaatgtcagcaccaggaggcagagaagggagtatctgtgtctagtgcccagcc 600
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 383 ctatctgtaatgtcagcaccaggaggcagagaagggagtatctgtggctagtgcccagcc 324
Query: 601 aatctgatgaatccacactagactttac 628
||||||||||||||||||||||||||||
Sbjct: 323 aatctgatgaatccacactagactttac 296
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_o12.g1 MSMg01no325_o12.g1 CHROMAT_FILE:
MSMg01no325_o12.g1 PHD_FILE: MSMg01no325_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:30 2005
(542 letters)
>mm_chr1_127507103_127508043
Length = 941
Score = 973 bits (503), Expect = 0.0
Identities = 536/555 (96%), Gaps = 15/555 (2%)
Strand = Plus / Plus
Query: 1 agccttcatcttcagcaatcggggaagtgagcagacaggccccactggtcctgttcctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 agccttcatcttcagcaatcggggaagtgagcagacaggccccactggtcctgttcctct 247
Query: 61 agaaccccggctaatatgacagtgattatgtctgaatgtgacatgtctcccataatgctc 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 248 agaaccccagctaatatgacagtgattatgtctgaatgtgacatgtctcccataatactc 307
Query: 121 agcatttgaccactcatctccaggtagtgacactgctctgaaaggctctagaatcatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 308 agcatttgaccactcatctccaggtagtgacactgctctgaaaggctctagaatcttcag 367
Query: 181 gtggtagaaccttcctggaggaagt-------------tttatagcctagacctaccttc 227
||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 368 gtggtagaaccttcctggaggaagtgagtcacttgagttttatagcctagacctaccttc 427
Query: 228 tgtcttaagatgcaatatgaccagccaggttcctgtgcccgtggctgttgttgtgacatt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgtcttaagatgcaatatgaccagccaggttcctgtgcccgtggctgttgttgtgacatt 487
Query: 288 ctcactacaagggaattattttagacataaagttcagggctgatggtccatctactggca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 488 ctcactacaagggaattattttagacataaagttcagggctgatggtccatctactgtca 547
Query: 348 cggggccttgaggtctgtgtttgcatttctctaatgaccctgaatgctaagtattttttt 407
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 -ggggccttgaggtctgtgtttgcatttctctaatgaccctgaatgctaagtattttttt 606
Query: 408 tttcctgagcatataggctatttctatgtaattctaggagaaacactgactgaagttctt 467
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tt-cctgagcatataggctatttctatgtaattctaggagaaacactgactgaagttctt 665
Query: 468 tgatcattcctaaattcagttatcttttagttgttgagttgtggcacttctttgtatatc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgatcattcctaaattcagttatcttttagttgttgagttgtggcacttctttgtatatc 725
Query: 528 ctgggcacttgtctc 542
|||||||||||||||
Sbjct: 726 ctgggcacttgtctc 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 941
Length adjustment: 10
Effective length of query: 532
Effective length of database: 931
Effective search space: 495292
Effective search space used: 495292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
