BAC Information

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BAC

Clone NameMSMg01-326C10
Chromosome1 (Build37)
Map Location 26,896,645 - 26,897,025
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik
Downstream geneLOC677427, LOC100040952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326C10.T7 (MSMg01no326_c10.b1)MSMg01-326C10.TJ (MSMg01no326_c10.g1)
ACCAG443851AG443852
length719763
length of high quality
(start - end)
389 (45 - 433)235 (76 - 310)
definitionCHROMAT_FILE: MSMg01no326_c10.b1 PHD_FILE: MSMg01no326_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:48 2005CHROMAT_FILE: MSMg01no326_c10.g1 PHD_FILE: MSMg01no326_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACAACAAGGCTTCAAAGTTGTAATTCTAACAATTTCCCAAATGAT
GTTTACATTGTCAAATAAATTATATTTGGACAACAGATGTCCTACACATG
ATAGTTTATCCATATCTAGTCCTCCCACCTGTATTCATGTGAAATTAAAT
TCATAAAGGAAAATTCTTAACACTGTATAATGTGAAAATTTTATCAAATT
TAATGGAGTTTTTGTGCTTTTGCCTTGACTTATTATATCTTGTTTTGTTT
AGTTTGGTTGTCATCTCTTGGAGTTATGCTACTTTCTAAAGAGATATAGA
CAGGGAATGGATCTGGGGAAGAAGGGATGTAAGGGGGGCTGGAAGGAGTT
GAGGGAGGGGAAACTGCGGAATAAATGTGCTNGATGATAGAAGAAGACCT
CCTTCCTTGCCTAACCGTCGTGAATTTCTAAGTTAAATATTTCCCACCCG
TTGTACACTATTACAAGTAGAATTTGTTTTATACCTCTTAACCACATTCG
ATGTTACCTGCCCAGAATATTATCTTTAACAAGTTTTATGTTAATCTTGT
AAAACCCCATGTCTTTCTTATTCCCTTTCTTTCTCTTTTGTCCCCTTCTT
ATTTCCCCCCCTCGAATCCCCCTCCCCCTCTGGCTAACACTCTCGCGCAT
CTCTCCTTCTCGCTTTTCN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAATGTTTTAGATATGGGTTATGTT
GAAATGTTGTCTTATGCCATCTACTATATTGAAAAGTTGGCTCTGGAGTT
GGAAAGGTTCTGTCCTATGTCAAGCAAATAATCTGACTTTGGGGCAGAAA
TAAAAAGAGCAAGATGTCAGCCAGACAGGGGGGGGGGAGAGGGAGAGGGA
GAGAGAGGCTCTCTCTCTCTCTCTTTCCTTCTCCCTCTCCCTCCCTCCCC
CTCTCAGCACATTGTTTTTTTTTTTATCTATACACCTGCACATATACTGT
ATGTTTACATGTATGCCCGTATGCACATGTGTGCCTGTATGTGTTATTCA
ACCTTGTATTTGCCCCCCCCCTTTCACCAGCCGCACACTCTTTTCTCTCC
TTTTGCACTGATCTGATCACCCGAAGTACATCACCTTGTTCCATTCCATC
TTTTGTATATACCATTGATCCAGTCTATGTTCCCCCTGTTCCCTTCTGCT
CTTACTCCCTGTTTACTGCTCATCACTATTCTGAACTCGATCTGTTTGTT
CATATTATCTCCACTTTGTTTTTATCCTCCCTTACTCTTCCCCACCTGTT
ACTGCCCACCCTCTATATCCACCGTCTTCTTCCCGGTCTACTTCTCCCCG
CCCCGCTATCTGGAACTTCTTCTGCCTTTTTGTCCCTTCCTATCACAATT
ACTTCCCGCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_c10.b1 MSMg01no326_c10.b1 CHROMAT_FILE:
MSMg01no326_c10.b1 PHD_FILE: MSMg01no326_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:48 2005
         (389 letters)



>mm_chr1_26896441_26897229
          Length = 789

 Score =  714 bits (369), Expect = 0.0
 Identities = 378/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacaacaaggcttcaaagttgtaattctaacaatttcccaaatgatgtttacat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacaacaaggcttcaaagttgtaattctaacaatttcccaaatgatgtttacat 264

                                                                       
Query: 65  tgtcaaataaattatatttggacaacagatgtcctacacatgatagtttatccatatcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtcaaataaattatatttggacaacagatgtcctacacatgatagtttatccatatcta 324

                                                                       
Query: 125 gtcctcccacctgtattcatgtgaaattaaattcataaaggaaaattcttaacactgtat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcctcccacctgtattcatgtgaaattaaattcataaaggaaaattcttaacactgtat 384

                                                                       
Query: 185 aatgtgaaaattttatcaaatttaatggagtttttgtgcttttgccttgacttattatat 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgttaaaattttatcaaatttaatggagtttttgtgcttttgccttgacttattatat 444

                                                                       
Query: 245 cttgttttgtttagtttggttgtcatctcttggagttatgctactttctaaagagatata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttgttttgtttagtttggttgtcatctcttggagttatgctactttctaaagagatata 504

                                                                       
Query: 305 gacagggaatggatctggggaagaagggatgtaaggggggctggaaggagttgagggagg 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 gacagggaatggatctggggaagaaggtatgtaaggggggctggaaggagttgagggagg 564

                                
Query: 365 ggaaactgcggaataaatgtg 385
           |||||||| ||||||||||||
Sbjct: 565 ggaaactgtggaataaatgtg 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)