BAC Information

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BAC

Clone NameMSMg01-326C11
Chromosome1 (Build37)
Map Location 26,896,645 - 26,897,004
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik
Downstream geneLOC677427, LOC100040952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326C11.T7 (MSMg01no326_c11.b1)MSMg01-326C11.TJ (MSMg01no326_c11.g1)
ACCAG443853AG443854
length753827
length of high quality
(start - end)		364 (46 - 409)178 (78 - 255)
definitionCHROMAT_FILE: MSMg01no326_c11.b1 PHD_FILE: MSMg01no326_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:48 2005CHROMAT_FILE: MSMg01no326_c11.g1 PHD_FILE: MSMg01no326_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACAACAAGGCTTCAAAGTTGTAATTCTAACAATTTCCCAAATGA
TGTTTACATTGTCAAATAAATTATATTTGGACAACAGATGTCCTACACAT
GATAGTTTATCCATATCTAGTCCTCCCACCTGTATTCATGTGAAATTAAA
TTCATAAAGGAAAATTCTTAACACTGTATAATGTGAAAATTTTATCAAAT
TTAATGGAGTTTTTGTGCTTTTGCCTTGACTTATTATATCTTGTTTTGTT
TAGTTTGGTTGTCATCTCTTGGAGTTATGCTACTTTCTAAAGAGATATAG
ACAGGGAATGGATCTGGGGAAGAAGGGATGTAAGGGGGGCTGGAAGGAGT
TGAGGGAGGNNNNCCCCCCTTCNCCCCNTTCTTTCCCTTTCTCCTTTTCC
TTTTTTTCCTCCTCTTTTTTCCTTCTTCTTTCTTCTTCCTCCTTTTTCTT
TCTTTCCCCTTTTTTTTCTTTTTTTTTCTCTCCTTTCTTTTCTCTTTCCT
TCCTTCTTCCTTTTCTCTTTCTCCTCTTTTTTTCTCTCTCCCTTCTTCCT
CTTCTTCCCTCCTTCTCTCTCTCTTTTTTTTTCCTTTTCCTTCTTTTTCT
TTTCTTGGTTTTCTTCCTCTTCGTTTTTGCTTCCTCCCTCTTTTTCCCCC
CTCCTTCTCTTTTCCTCCGCTCCCCTCTCTTTTTTTCTTTCTTCCCCCTT
TTT

CCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGTTTTAGATATGGGTTATG
TTGAAATGTTGTCTTATGCCATCTACTATATTGAAAAGTTGGCTCTGGAG
TTGGAAAGGTTCTGTCCTATGTCAAGCAAATAATCTGACTTTGGGGCAGA
AATAAAAAGAGCAAGATGTCAGCCAGACAGGGGGGGGGGAGAGGGAGAGG
GAGAGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTTTTTTTTTTTNNNNNNNNNNNTNNNNNNNNN
NNNNNNNNNTTTTTTTTTTTTNNTTCCCCCTTTTCCCCCCCCTTTTCCCT
CTCTTTTTTCTTTCTTTTCCTTCCCCCCCCCCTTGTTTNTTTCTTTTTTT
TTCCTCCCTTTTTTGCTCTTCTTTTTTCTCCTTTCTCTTTCTTTTTTTTT
TCCTTTTGTCTTGTTGTTGTTCTCCTTTTTTTTTTCCCTCCCCTTCCCCC
GTTTCCTTTCCCTTCTTCTTTTCCCCCCCTTGTCTCTTTTTCTCTTCTCC
CCCTCTTTTTTTCTCTTTTCTTCCTCCTCTCCCGTTTCTTTTTCTCTCCT
CTCTGCCTCTCCTCTTCTTCTCTTTCTCCCTCCTCGCTTTCCTCCTTCCC
CTTTCTCCCCTTCTTCTTTTCTCTTTTCCCCCCTTCTCTCTTCTCTTCTC
CTTCTTTCTCCCTGTCCTCTTCTCTACTTCCTCCTTTTTTCCCCCCCCCT
TCTCTTTTTTCTTTATTTNCCCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_c11.b1 MSMg01no326_c11.b1 CHROMAT_FILE:
MSMg01no326_c11.b1 PHD_FILE: MSMg01no326_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:48 2005
         (364 letters)



>mm_chr1_26896441_26897204
          Length = 764

 Score =  681 bits (352), Expect = 0.0
 Identities = 358/360 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacaacaaggcttcaaagttgtaattctaacaatttcccaaatgatgtttacat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacaacaaggcttcaaagttgtaattctaacaatttcccaaatgatgtttacat 264

                                                                       
Query: 65  tgtcaaataaattatatttggacaacagatgtcctacacatgatagtttatccatatcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtcaaataaattatatttggacaacagatgtcctacacatgatagtttatccatatcta 324

                                                                       
Query: 125 gtcctcccacctgtattcatgtgaaattaaattcataaaggaaaattcttaacactgtat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcctcccacctgtattcatgtgaaattaaattcataaaggaaaattcttaacactgtat 384

                                                                       
Query: 185 aatgtgaaaattttatcaaatttaatggagtttttgtgcttttgccttgacttattatat 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgttaaaattttatcaaatttaatggagtttttgtgcttttgccttgacttattatat 444

                                                                       
Query: 245 cttgttttgtttagtttggttgtcatctcttggagttatgctactttctaaagagatata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttgttttgtttagtttggttgtcatctcttggagttatgctactttctaaagagatata 504

                                                                       
Query: 305 gacagggaatggatctggggaagaagggatgtaaggggggctggaaggagttgagggagg 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 gacagggaatggatctggggaagaaggtatgtaaggggggctggaaggagttgagggagg 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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