BAC Information

Click to search

BAC

Clone NameMSMg01-326F14
Chromosome1 (Build37)
Map Location 115,431,722 - 115,432,257
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326F14.T7 (MSMg01no326_f14.b1)MSMg01-326F14.TJ (MSMg01no326_f14.g1)
ACCAG443997AG443998
length742740
length of high quality
(start - end)
692 (47 - 738)342 (77 - 418)
definitionCHROMAT_FILE: MSMg01no326_f14.b1 PHD_FILE: MSMg01no326_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:03 2005CHROMAT_FILE: MSMg01no326_f14.g1 PHD_FILE: MSMg01no326_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATATGCACCCAGGCTAACAATGAGGGTCAACCATCGAAGTATC
TCTTCTCTTGTCCTTCAGTGTTGAGTGGTTTGTGCTTCCCACAGGCTTGC
TTTAGAACCCATAGAGCCACTGGAGAGAAGAGATGGTGTCCCACATATCA
TCCCCCACTGGCATGTTTAGGGATCCTTTGCAAAACTGAATCATGTTCTT
AACAGGGACGGTGTGCTTTCTTCCATGTCAGAGATGTCCTGCCTCTGCTA
TCATTTGCCACAAATAAAAGAAATTAATTGCTAGGAATTAAAGCAGAGAG
TGTACAGTACCACAGTGTGTGAGGTTTGTCCTCATATGACTTTATTTTCA
CACTTTCCTGTTCTAAACCACCATTCATGGTGATGTGATAAAGGAGCTCA
CTATATTTGAGACAGTGAATTTTCTAACTAATTAGAGCAAAATTTCAAAA
TGTTATTGATACCCCTGGCAGTCAGCTCTGACCCTTTTAATTTCATTAGC
TTGAAGGCTGAGAGACCTGCAGAAAAACTTTTTCTTTTTTTTTTCCCAAT
TTTTAATAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTC
CCCCATACCCACCCACCCCCACTCCCCTACCCACTCACTCCCCCTTTTTG
GCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTGGAGGATTTTAACTTTGAT
GAGTATGAAGTGTCCCTCCTTGTCTTTTTTGATAACTTTGGGTCGGAAGT
TGATTTTATCCGATATTAGAATGGCTACTCCGGCTTGTTTCCTCAGACCA
TTTGCTTGGAAAATTGTTTTCCAGCCTTTCACTCTGAGGTAGTGTCTGTT
TTTTTTTCCCTGAGATGGGTTTCCTGTAAGCAGCAGAATGTTGGGTCCTG
TTTGTGTAGCCAGTGTGTTAATCTATATCTTTTTATTGGGGAATTGAGTC
CATTTATATTAAGAGATATTAAGGAAAAGTAATTGTTGCTTCCTGTTATT
TTTGTTGTTAGAGTTGGCACCCCGCTCTTGTGGCTGTCTTCTTTTTGGTT
TGTTGAGGGATTACTTTCTTGTTTGTTCTAGGGCGTGATTTCCGTCCTTG
TATTGCTTCTTTTCTGTTATTATCCTTTGAAGGGCTGGATTCGTGGAAAG
ATATTGTGTGAATTTGGTTTTGTCGTGGAATACTTTGGTTTCTCCATCGA
TGGCAATTGAGAGTTTGGCCAGGTATACTACCCTGGCCTGCCATTTGTGA
TCTCTTAAAGTCTGTATAACATCTGGCCATGGTCTTCTGGATTTCATAAN
CTCTGGTGAAATGTCTGGAGTAGTTCTGATAGGCCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_f14.b1 MSMg01no326_f14.b1 CHROMAT_FILE:
MSMg01no326_f14.b1 PHD_FILE: MSMg01no326_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:03 2005
         (692 letters)



>mm_chr1_115431518_115432607
          Length = 1090

 Score =  884 bits (457), Expect = 0.0
 Identities = 518/539 (96%), Gaps = 4/539 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatatgcacccaggctaacaatgagggtcaaccatcgaagtatctcttctcttg 64
           |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattccatatgcaaccaggctaacaatgagggtcaaccatcgaattatctcttctcttg 264

                                                                       
Query: 65  tccttcagtgttgagtggtttgtgcttcccacaggcttgctttagaacccatagagccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccttcagtgttgagtggtttgtgcttcccacaggcttgctttagaacccatagagccac 324

                                                                       
Query: 125 tggagagaagagatggtgtcccacatatcatcccccactggcatgtttagggatcctttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggagagaagagatggtgtcccacatatcatcccccactggcatgtttagggatcctttg 384

                                                                       
Query: 185 caaaactgaatcatgttcttaacagggacggtgtgctttcttccatgtcagagatgtcct 244
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 385 caaaactgaatcatgttcttaacagggacagtgtcctttcttccatgtcagagatgtcct 444

                                                                       
Query: 245 gcctctgctatcatttgccacaaataaaagaaattaattgctaggaattaaagcagagag 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcctctgctatcatttgccaaaaataaaagaaattaattgctaggaattaaagcagagag 504

                                                                       
Query: 305 tgtacagtaccacagtgtgtgaggtttgtcctcatatgactttattttcacactttcctg 364
           ||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 tgtccactaccacagtgtgtgaggtttgtcctcatatgactttcttttcacactttcctg 564

                                                                       
Query: 365 ttctaaaccaccattcatggtgatgtgataaaggagctcactatatttgagacagtgaat 424
           |||||||||| |||| |||||||||||||||||| ||||||||| ||||||||  |||||
Sbjct: 565 ttctaaaccagcattgatggtgatgtgataaaggggctcactatctttgagac--tgaat 622

                                                                       
Query: 425 tttctaactaattagagcaaaatttcaaaatgttattgatacccctggcagtcagctctg 484
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 623 tttctaactaattagagcaaattttcaaaatgttattgatacccctggcagccagctctg 682

                                                                      
Query: 485 -acccttttaatttcattagcttgaaggctgagagacctgcagaaaaactttttctttt 542
            ||| ||||||||| ||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 683 tacc-ttttaatttaattagcttgaaggccaagagacctgcagaaaaactttttctttt 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1090
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1080
Effective search space:   736560
Effective search space used:   736560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)