BAC Information

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BAC

Clone NameMSMg01-326H16
Chromosome1 (Build37)
Map Location 89,127,622 - 89,127,791
singlet/doubletsinglet
Overlap geneEif4e2
Upstream geneArmc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng
Downstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326H16.T7 (MSMg01no326_h16.b1)MSMg01-326H16.TJ (MSMg01no326_h16.g1)
ACCAG444094
length742830
length of high quality
(start - end)
---170 (76 - 245)
definitionCHROMAT_FILE: MSMg01no326_h16.b1 PHD_FILE: MSMg01no326_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:12 2005CHROMAT_FILE: MSMg01no326_h16.g1 PHD_FILE: MSMg01no326_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
NCGATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGATGGCCATGACTACACTGGGA
GACCACGTCTCAAAATCAACTAAAATTATTAATAAAGGACTAGGCAATGT
ACGTTATATATGCTATTCTATAGAATAGCAGCTTTTTTATTTTATTTTTT
TTAATTTTCAAAAAAGCTACTATTTTATGACAAATGGCTCACAGGAAAAC
CTAAAACTGTTAAAGAAGTATGCCAGAACTTGTCAATTCCCGAGCTCTTT
CTGNANACACANGNATGATTTGTTCCCTGGCTCCTAAGGGACGCCNAAGG
CGNCTTTCCCTCTTTACTCCCACTGAAAAAAAATAAAAATCCAACACTTG
GGAAGGGTGGGGGTGTTTCCCCCCCCCCCCACAANNTATTTTNCTCCCTT
TATAAANCTTCCTCACCCCTTTACAGGTTATTCACCCAACCCCTTGAATC
TCCCCCTCTCATTATTACCCCCTTTCTTTTCATAAAAANTTCCACAACCC
CCCCCCCCTCTCCATCCCCCTCTGGGCGTNTAAACAAAAACAAGCGGCAA
CCAAANNNNNCTTTTTGGCTTTGTCCTGCNNCTCCTTTTNCTCCNGGGGT
GAGGGGGCGTTCTTCNNTTTACACNNTTTTATACCGAAGGGGCGAGGGGG
GGGGGGTCCTTATATTCTNCCTCCGCTCCATTAGGAGAGAGGGGTGTGTC
AAAAGACCAAATTCCATAGCGATTTATACNAATTTATAATGATGTTATTT
ATTTCTTCGCAGTGGAAGGTGATTTCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_h16.g1 MSMg01no326_h16.g1 CHROMAT_FILE:
MSMg01no326_h16.g1 PHD_FILE: MSMg01no326_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:12 2005
         (170 letters)



>mm_chr1_89127485_89128054
          Length = 570

 Score =  298 bits (154), Expect = 1e-85
 Identities = 166/170 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatggccatgactacactgggagaccacgtctcaaaatcaactaaaattattaataa 60
           ||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 307 caggatggccaagactacactgggagaccacgtctcaaaatcaagtaagattattaataa 248

                                                                       
Query: 61  aggactaggcaatgtacgttatatatgctattctatagaatagcagcttttttattttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aggactaggcaatgtacgttatatatgctattctatagaatagcagcttttttattttat 188

                                                             
Query: 121 tttttttaattttcaaaaaagctactattttatgacaaatggctcacagg 170
           ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 187 tttttttaattttcagaaaagctactattttatgacaaatggctcacagg 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)