BAC Information

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BAC

Clone NameMSMg01-326I15
Chromosome1 (Build37)
Map Location 144,189,929 - 144,316,231
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326I15.T7 (MSMg01no326_i15.b1)MSMg01-326I15.TJ (MSMg01no326_i15.g1)
ACCAG444136AG444137
length699738
length of high quality
(start - end)		201 (46 - 246)657 (79 - 735)
definitionCHROMAT_FILE: MSMg01no326_i15.b1 PHD_FILE: MSMg01no326_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:16 2005CHROMAT_FILE: MSMg01no326_i15.g1 PHD_FILE: MSMg01no326_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,316,034 - 144,316,231)(144,189,929 - 144,190,585)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATCTTCTCACTAACATCTATATTGTGTCTCCAGGTGATTAATTT
GTTTGATCATGTGACTGAATGCCATCATTGTAACATTAACAGAAAAATGC
AAAGAAAGTTTGAAACCCACAAAGTATATACAATTAAGTATATACAGTTT
CTTAGCCCTTATCAGGTAGTGTTAGGCTTTAAAGCCCAAATTTACAACTT
TTAGAGTAAGGTTCAACAAAATTAACTAATTGTATTCGACAGGAAAAAAG
CCAAAAGCTTTTTTTTTTCCCCAAAAAAAATTTATAATTCCTCCCCCCCA
AAAAAGTTCTCCCCCCCCCAAAAAAAAAAAATTTTGGGTTTTTCCCCCCC
CGGGGGGGGGGGGTAATTAAAATAAATATTTTTTTTGCCCCCCTCCTCTT
CTCTCTCACTTTATTTGTTTCTTCTTACTCTTCCTATTGTTTTTTCTTTC
CTCTTTTTATTTCATTCTTTTATCCTTTAATTTATACTATATTTTATTAC
GCTTCTTCCCTCCTTTTCTCATTTTTAATTATTACTCCCTACATCTTTTT
ATACTACTTCTACCATGCCCATTTCTATTCCAACTCCCCTTAATTCCTTC
TCTTTATTATTTCTCCCCCTCCTCCACTTTTATCCTGTCTTCCCTTTTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGAGGTACACTTAATAAATT
GGCCTTTAGAAAATACAATGAGGTTACATTAAAGTGCCATTTCAGTTTCC
TGAAAATACCAGCATATAACAAAAAGTTATAGTGAAAATCTTTCTTTTAA
ATAGCAGGTGGAGACATTTATATAATTAGATAATTACACAAATTAATCTT
AATTTGTGATTTAAAATTTAGATAGTTATTTAGACATTTAAATATATGTG
TGTTTATGCACATGTGTTTGTAAGCATATGGGCATATGAGACTAATGTTA
TTTTCCTTTCATTTGTGTCTGTATACTACATGCTTGCCTGGGGCACTCAG
AGGCCATAAATGGACATCACACCCCAGAAAGCTAGAGTTATAGATGTTGT
AAGCTCTCCTGTGGGGTTTGGGGAATTAAACAGAGCATCGTTCAAGCCCA
TCGAGGACAGTGTTTCTTACCTTTTTATTTATTTATATTTTATTTATTTA
CTTTACTTTACATTTCAGATTTTATTCCCCTCCTGATTTACCCTCCAAAC
ATTCCACATCCTATACCTCCTCCCCGCCCTGATAGTTTTTAAATCAATAA
GACAAATTTAACCATTCCACTTTAGAAGAACAAGTCAACTTCTGTAACCT
TTTCCCATTCTTTATTATCCTTTTATCTCTGTCATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_i15.b1 MSMg01no326_i15.b1 CHROMAT_FILE:
MSMg01no326_i15.b1 PHD_FILE: MSMg01no326_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:16 2005
         (201 letters)



>mm_chr1_144315831_144316431
          Length = 601

 Score =  368 bits (190), Expect = e-106
 Identities = 196/198 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatcttctcactaacatctatattgtgtctccaggtgattaatttgtttgatc 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ggaattcaatcttctcagtaacatctatattgtgtctccaggtgattaatttgtttgatc 342

                                                                       
Query: 64  atgtgactgaatgccatcattgtaacattaacagaaaaatgcaaagaaagtttgaaaccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 341 atgtgactgaatgccatcattgtaacattaacagaaaaatgcaaagaaagtttgaaaacc 282

                                                                       
Query: 124 acaaagtatatacaattaagtatatacagtttcttagcccttatcaggtagtgttaggct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 acaaagtatatacaattaagtatatacagtttcttagcccttatcaggtagtgttaggct 222

                             
Query: 184 ttaaagcccaaatttaca 201
           ||||||||||||||||||
Sbjct: 221 ttaaagcccaaatttaca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no326_i15.g1 MSMg01no326_i15.g1 CHROMAT_FILE:
MSMg01no326_i15.g1 PHD_FILE: MSMg01no326_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:16 2005
         (657 letters)



>mm_chr1_144189729_144190785
          Length = 1057

 Score = 1208 bits (625), Expect = 0.0
 Identities = 649/657 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaggtacacttaataaattggcctttagaaaatacaatgaggttacattaaagtgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggaggtacacttaataaattggcctttagaaaatacaatgaggttacattaaagtgcc 260

                                                                       
Query: 61  atttcagtttcctgaaaataccagcatataacaaaaagttatagtgaaaatctttctttt 120
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 atttcagtttcctgaaaatactagcatataacaaaaagtgatagtgaaaatctttctttt 320

                                                                       
Query: 121 aaatagcaggtggagacatttatataattagataattacacaaattaatcttaatttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatagcaggtggagacatttatataattagataattacacaaattaatcttaatttgtg 380

                                                                       
Query: 181 atttaaaatttagatagttatttagacatttaaatatatgtgtgtttatgcacatgtgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttaaaatttagatagttatttagacatttaaatatatgtgtgtttatgcacatgtgtt 440

                                                                       
Query: 241 tgtaagcatatgggcatatgagactaatgttattttcctttcatttgtgtctgtatacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaagcatatgggcatatgagactaatgttattttcctttcatttgtgtctgtatacta 500

                                                                       
Query: 301 catgcttgcctggggcactcagaggccataaatggacatcacaccccagaaagctagagt 360
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 501 catgcttgcctggggcactcagagaccataaatggacatcagaccccagaaagctagagt 560

                                                                       
Query: 361 tatagatgttgtaagctctcctgtggggtttggggaattaaacagagcatcgttcaagcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 tatagatgttgtaagctctcctgtggggtttggggaattaaacagagcatctttcaagcc 620

                                                                       
Query: 421 catcgaggacagtgtttcttacctttttatttatttatattttatttatttactttactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catcgaggacagtgtttcttacctttttatttatttatattttatttatttactttactt 680

                                                                       
Query: 481 tacatttcagattttattcccctcctgatttaccctccaaacattccacatcctatacct 540
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 tacatttcagattgtattcccctcctgatttaccctccaaacattccacatcccatacct 740

                                                                       
Query: 541 cctccccgccctgatagtttttaaatcaataagacaaatttaaccattccactttagaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctccccgccctgatagtttttaaatcaataagacaaatttaaccattccactttagaag 800

                                                                    
Query: 601 aacaagtcaacttctgtaaccttttcccattctttattatccttttatctctgtcat 657
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 801 aacaagtcaacttctgtaagcttttcccattctttattatccttttatctctgtcat 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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