Query= MSMg01no326_i16.b1 MSMg01no326_i16.b1 CHROMAT_FILE:
MSMg01no326_i16.b1 PHD_FILE: MSMg01no326_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:16 2005
(554 letters)
>mm_chr1_88926651_88927604
Length = 954
Score = 998 bits (516), Expect = 0.0
Identities = 541/552 (98%), Gaps = 6/552 (1%)
Strand = Plus / Plus
Query: 6 gaattctcatctttcc---tgagagaaggttatagttctgagccaagactaccctgggtg 62
||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctcatc---ccaggtgagagaaggttatagttctgagccaagactaccctgggtg 262
Query: 63 caccatacagcaaagtgcctgttcatgcagacatgacatgtttcccacagctgcctttga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caccatacagcaaagtgcctgttcatgcagacatgacatgtttcccacagctgcctttga 322
Query: 123 ggacacctcttagttctgcaccatcttcccctctctgagattctgtatgtttgtgttcta 182
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggacacctcctagttctgcaccatcttcccctctctgagattctgtatgtttgtgttcta 382
Query: 183 catctgccaactaagctaaactgactcaactattagatgcattttcctaccccatcccat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 catctgccaactaagctaaactgactcaactattagatgcattttcctaccccatcccat 442
Query: 243 cctataccacccaactgcacctcatttcccccatcccaccccatcccatcccactcctcc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cctataccacccaactgcacctcatttcccccatcccaccccatcccatcccactcctcc 502
Query: 303 tccctcccgccaaatcccatcatgaagtgcctccttccctggagcctagcaggttgccca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tccctcccgccaaatcccatcatgaagtgcctccttccctggagcctagcaggttgccca 562
Query: 363 ccactttacgcccaatatgtgtcctctatcctttagtataaccagactagtcaggtggtc 422
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccactttatgctaaatatgtgtcctctatcctttagtataaccagactagtcaggtggtc 622
Query: 423 accatgttttgtgtaaggaatgccattcatcactgttctgctcatgaaacagaatgccct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 accatgttttgtgtaaggaatgccattcatcactgttctgctcatgaaacagaatgccct 682
Query: 483 tttcactccctctgactttctcagtgaattctccagtgctgatgtcatcaaacttgactc 542
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 683 tttcactccctctgactttctcagtgaattttccagtgctgatgtcatcaaacttgactc 742
Query: 543 ccaatttttaac 554
||||||||||||
Sbjct: 743 ccaatttttaac 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_i16.g1 MSMg01no326_i16.g1 CHROMAT_FILE:
MSMg01no326_i16.g1 PHD_FILE: MSMg01no326_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:16 2005
(473 letters)
>mm_chr1_89126984_89127858
Length = 875
Score = 868 bits (449), Expect = 0.0
Identities = 468/475 (98%), Gaps = 2/475 (0%)
Strand = Plus / Minus
Query: 1 caggatggccatgactacactgggagaccacgtctcaaaatcaagtaagattattaataa 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 caggatggccaagactacactgggagaccacgtctcaaaatcaagtaagattattaataa 749
Query: 61 aggactaggcaatgtacgttatatatgctattctatagaatagcagcttttttattttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aggactaggcaatgtacgttatatatgctattctatagaatagcagcttttttattttat 689
Query: 121 tttttttaattttcagaaaagctactattttatgacaaatggctcacaggaaaacctaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tttttttaattttcagaaaagctactattttatgacaaatggctcacaggaaaacctaag 629
Query: 181 actgttaaagaagtatgccagaacttgtcaattcccgagctctttctggagacacagtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 actgttaaagaagtatgccagaacttgtcaattcccgagctctttctggagacacagtga 569
Query: 241 tgagctgttctctggctcctaagggatgcgggaggcggcttccctctttactctcaatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgagctgttctctggctcctaagggatgcgggaggcggcttccctctttactctcaatga 509
Query: 301 agacaagtaaaaatccaacacttggacaatgacctgggaaccccccaccaagatttaatt 360
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 508 agacaagtaaaaatccaacacttggacaatgacctgggaacctaacagcaagatttaatt 449
Query: 361 tctactttaagtaactaagaggtcaacaaggtcacacagcagggttgaagtccatctcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tctactttaagtaactaagaggtcaacaaggtcacacagcagggttgaagtccatctcat 389
Query: 421 ttatccctttgtttccagaagggccagtccctactaa--ctgcctaacaatggtt 473
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 388 ttatccctttgtttccagaagggccagtccctactaactctgcctaacaatggtt 334
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 875
Length adjustment: 10
Effective length of query: 463
Effective length of database: 865
Effective search space: 400495
Effective search space used: 400495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
